Hi,
On the last test I made I used the source code cloned from
https://phabricator.mitk.org/source/mitk.git today (after you merged the patch
into the master), with no modification nor additional code.
I proceeded to the following build steps:
- Switched on MITK_USE_SOFA in the superbuild (which forced 3 boost libraries
on), configured twice, generated the solution, and built project ALL_BUILD in
debug mode
- Switched in CMake to the MITK-build directory to switch both
MITK_BUILD_org.mitk.simulation and MITK_BUILD_org.mitk.gui.qt.simulation
plugins on, configured and generated.
- I opened the solution directly from CMake, then built and run MITKWorkbench.
All projects are built successfully (including MitkWorkbench without any error,
but I encounter an error when running MitkWorkbench (in Debug mode). I also
tried to use the /BlueBerry.clean argument, with the same result.
When I run MitkWorkbench, a pop-up window appears with the following text:
-------------------------------------------------------------------------------------------------------------------------
Exception thrown: read access violation.
this-> was 0x7FFF33F669E8
If there is a handler for this exception, the program may be safely continued.
-------------------------------------------------------------------------------------------------------------------------
I encounter the error before the interface is visible, and it occurs when the
plugins are being loaded. Here is the call stack when the application crashes:
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
SofaCore_1_0d.dll!boost::detail::sp_counted_base::release() Line 103
SofaCore_1_0d.dll!boost::detail::shared_count::~shared_count() Line 473
[External Code]
SofaCore_1_0d.dll!boost::checked_delete<sofa::core::ObjectFactory::ClassEntry>(sofa::core::ObjectFactory::ClassEntry
* x) Line 34
SofaCore_1_0d.dll!boost::detail::sp_counted_impl_p<sofa::core::ObjectFactory::ClassEntry>::dispose()
Line 79
SofaCore_1_0d.dll!boost::detail::sp_counted_base::release() Line 104
SofaCore_1_0d.dll!boost::detail::shared_count::~shared_count() Line 473
[External Code]
SofaCore_1_0d.dll!sofa::core::ObjectFactory::~ObjectFactory() Line 37
[External Code]
Qt5Cored.dll!QLibraryPrivate::unload_sys() Line 151
Qt5Cored.dll!QLibraryPrivate::unload(QLibraryPrivate::UnloadFlag flag) Line 552
Qt5Cored.dll!QPluginLoader::unload() Line 256
CTKPluginFramework.dll!ctkPluginStorageSQL::insertArchive(QSharedPointer<ctkPluginArchiveSQL>
pa, QSqlQuery * query) Line 491
CTKPluginFramework.dll!ctkPluginStorageSQL::insertArchive(QSharedPointer<ctkPluginArchiveSQL>
pa) Line 400
CTKPluginFramework.dll!ctkPluginStorageSQL::insertPlugin(const QUrl & location,
const QString & localPath) Line 378
CTKPluginFramework.dll!ctkPlugins::install(const QUrl & location, QIODevice *
in) Line 119
CTKPluginFramework.dll!ctkPluginContext::installPlugin(const QUrl & location,
QIODevice * in) Line 101
CTKPluginFramework.dll!ctkPluginFrameworkLauncherPrivate::install(const QUrl &
pluginPath, ctkPluginContext * context) Line 238
CTKPluginFramework.dll!ctkPluginFrameworkLauncherPrivate::loadBasicPlugins()
Line 335
CTKPluginFramework.dll!ctkPluginFrameworkLauncher::startup(QRunnable *
endSplashHandler) Line 522
CTKPluginFramework.dll!ctkPluginFrameworkLauncher::run(QRunnable *
endSplashHandler, const QVariant & argument) Line 423
MitkAppUtil.dll!mitk::BaseApplication::main(const
std::vector<std::basic_string<char,std::char_traits<char>,std::allocator<char>
>,std::allocator<std::basic_string<char,std::char_traits<char>,std::allocator<char>
> > > & args) Line 701
PocoUtild.dll!Poco::Util::Application::run() Line 333
MitkAppUtil.dll!mitk::BaseApplication::run() Line 824
MitkWorkbench.exe!main(int argc, char * * argv) Line 41
[External Code]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
The code crashes when a call is made to method insertArchive in
ctkPluginStorageSQL.cpp, relatively to the simulation plugin. This triggers a
call to QPluginLoader::unload() method, and finally results in a crash when
calling release() method of a Boost smart pointer.
I'll keep investigating but at the moment I don't know why this happens.
I certainly can provide you with more details if you need some.
Best,
Camille
----- Original Message -----
From: "Stefan Dinkelacker" <s.dinkelac...@dkfz-heidelberg.de>
To: "Camille Krewcun" <camille_krew...@orange.fr>
Cc: mitk-users@lists.sourceforge.net, "Federico Milano" <fmil...@gmail.com>
Sent: Jeudi 23 Février 2017 17:42:30
Subject: AW: [mitk-users] [Simulation plugin] Execution error at plugin loading
Hi, I tested successfully on Windows 10 as well. I need more information to be
able to guess what's going on. Did you modify or add code? What's the call
stack? Does it work by simply start the Workbench with a /BlueBerry.clean
argument? When does it crash?
Best,
Stefan
________________________________
Von: Camille Krewcun <camille_krew...@orange.fr>
Gesendet: Donnerstag, 23. Februar 2017 16:01
An: Dinkelacker, Stefan
Cc: mitk-users@lists.sourceforge.net; Federico Milano
Betreff: Re: [mitk-users] [Simulation plugin] Execution error at plugin loading
Hi
Thanks for your messages, and for the patch. I had encountered the MSVC related
error you mentionned before (snprintf, hash_map, and eigen) but hadn't gone
further.
However I think that the first problem I mentioned with this topic is not
related to the compiler version, nor to these problems.
I've just tried to compile (with MSVC 2015) and execute MITK with the patch you
merged earlier today into master, and although the building process is now
performed successfully, I still encounter the same error (memory access
violation) when trying to execute the Workbench.
In addition to that, a colleague of mine successfully reproduced this problem
on another computer with the following configuration:
- Windows 10 (version 1607, anniversary update)
- CMake v3.5.2
- Qt v5.6.2
- MITK 2016.11.0 release sources
- MSVC 2013 Community Update 5
You mentioned that you tested several configurations today: did one of these
include a Windows 10 environment?
Best,
Camille
________________________________
From: "Stefan Dinkelacker" <s.dinkelac...@dkfz-heidelberg.de>
To: "Federico Milano" <fmil...@gmail.com>, "Camille Krewcun"
<camille_krew...@orange.fr>
Cc: mitk-users@lists.sourceforge.net
Sent: Jeudi 23 Février 2017 12:30:04
Subject: RE: [mitk-users] [Simulation plugin] Execution error at plugin loading
FYI, I tested it today on several configurations and it worked. Merged into
master.
Best,
Stefan
-----Original Message-----
From: Dinkelacker, Stefan [mailto:s.dinkelac...@dkfz-heidelberg.de]
Sent: Donnerstag, 23. Februar 2017 01:22
To: Federico Milano; Camille Krewcun
Cc: mitk-users@lists.sourceforge.net
Subject: Re: [mitk-users] [Simulation plugin] Execution error at plugin loading
Hi,
I just gave it a shot with MSVC 2015 and pushed a branch for this[1]. Seems
like it is working now but it needs more testing.
Best,
Stefan
[1] https://phabricator.mitk.org/T22551
________________________________
Von: Federico Milano <fmil...@gmail.com>
Gesendet: Montag, 20. Februar 2017 19:16
An: Camille Krewcun; Dinkelacker, Stefan
Cc: mitk-users@lists.sourceforge.net
Betreff: Re: [mitk-users] [Simulation plugin] Execution error at plugin loading
Hi Stefan, Camille,
The issues are not OS related but compiler related. VS 2015 has issues with
snprintf. Once you solve them you (there's a macro to disable that check) you
will find issues with the private eigen version of SOFA. Those issues are much
harder to solve.
If you use Vs 2013 you won't find these issues.
Federico
El El lun, 20 de feb. de 2017 a las 07:25, Dinkelacker, Stefan
<s.dinkelac...@dkfz-heidelberg.de<mailto:s.dinkelac...@dkfz-heidelberg.de>>
escribió:
Hi,
it was Windows 8.1. Regarding Windows 10, we only have configurations with
VS2015, but not VS2013. We found some compile errors regarding snprintf on
these machines today, which I will investigate later today or tomorrow.
Best,
Stefan
From: Camille Krewcun
[mailto:camille_krew...@orange.fr<mailto:camille_krew...@orange.fr>]
Sent: Freitag, 17. Februar 2017 17:04
To: Dinkelacker, Stefan
Cc: mitk-users@lists.sourceforge.net<mailto:mitk-users@lists.sourceforge.net>
Subject: Re: [mitk-users] [Simulation plugin] Execution error at plugin loading
Hi,
As a follow-up to my previous mail, here is what I could give a deeper look to:
- I started the building process from the beginning on another computer with
the same configuration, except for the OS which was Microsoft Windows 7
(service pack 1, x64). I didn't encounter the same error and was able to
successfully launch the Workbench with the simulation plugin on.
- I tried to suppress everything related to MITK on the computer running under
Windows 10 and started once more, in case there would have been a conflict I
would not have been aware of. Once again I was able to go through all the
building process without any error, but encountered the same problem (memory
access violation) when running the Workbench.
- I finally updated my Windows 10 version with the anniversary update (version
1607, build 14393), but this was also unsuccessful.
Considering these elements I would say the problem is likely to come either
from windows 10 or from conflicting files on my computer I couldn't find.
Were you running on Windows 10 when you tried to reproduce the error? Or do you
know if a test has been made recently on Windows 10 (I saw it was part of the
Tier 2 supported platforms)?
Otherwise the problem must be specifically related to something on my computer.
Regards,
Camille
________________________________
From: "Camille Krewcun"
<camille_krew...@orange.fr<mailto:camille_krew...@orange.fr>>
To: "Stefan Dinkelacker"
<s.dinkelac...@dkfz-heidelberg.de<mailto:s.dinkelac...@dkfz-heidelberg.de>>
Cc: mitk-users@lists.sourceforge.net<mailto:mitk-users@lists.sourceforge.net>
Sent: Mercredi 1 Février 2017 16:18:41
Subject: Re: [mitk-users] [Simulation plugin] Execution error at plugin loading
Hi Stefan,
Thanks for your answer!
I did exactly the same as you described in the first two lines of your message
(and encountered the same forced switch on for the Boost libraries).
As for the things that could have gone wrong:
- I didn't encounter any error during the superbuild (although warnings were
triggered), and everything was built successfully
- I used the debug batch file (StartVS_debug.bat) to launch the Workbench after
compiling in Debug mode. I also tried to do all the building process in Release
mode (also following the same steps as you described), using this time the
release batch file, and apparently encountered what seems to be the same error.
- I checked that both simulation plugins (org.mitk.simulation and
org.gui.qt.simulation) were indeed switched on
I finally tried to delete all the Workbench folders in the AppData directory
but I still encounter the same error, although not with the same callstack as
plugins were directly loaded (and not updated). However a call to the
insertArchive method is also made during this loading process, and it triggers
the error when used relatively to the org.mitk.simulation plugin.
I made a lot of manipulations relatively to MITK lately, and I'm not sure that
I'm not missing anything. I'll try to reproduce the problem in a "clean"
machine, starting from 2016.03 sources only, and going through the entire
building process.
I'll keep you updated if I encounter the error once more.
Best,
Camille
________________________________
From: "Stefan Dinkelacker"
<s.dinkelac...@dkfz-heidelberg.de<mailto:s.dinkelac...@dkfz-heidelberg.de>>
To: "Camille Krewcun"
<camille_krew...@orange.fr<mailto:camille_krew...@orange.fr>>,
mitk-users@lists.sourceforge.net<mailto:mitk-users@lists.sourceforge.net>
Sent: Mercredi 1 Février 2017 15:15:18
Subject: RE: [mitk-users] [Simulation plugin] Execution error at plugin loading
Hi,
I have just done a superbuild with your setup (2016.03, CMake 3.7, VS 2013
Community Update 5, and Qt 5.4.2). I switched on MITK_USE_SOFA in the
superbuild. Boost with a few libraries were force switched on then. I
configured again and generated the superbuild solution. I built the project
MITK-Configure in Debug Configuration, and then switched in CMake to the
MITK-build directory to switch on the two simulation plugins.
Configure/Gerenrate. I used the debug batch file (!) to open the MITK solution
and built/run MITKWorkbench. So everything works for me.
Thing that might have gone wrong in your case:
- Did you check, that the superbuild was completely successful?
- Did you use the right batch file to open the MITK solution?
- Did you switch on both simulation plugins?
- If you’re sure that everything was built successfully, you can either go to
%APP_DATA%/../Local/DKFZ and delete all the Workbench folders to force a clean
start of the Workbench, or pass /BlueBerry.clean once as argument to the
Workbench, which will do the same (remember to remove the argument later). You
can add the argument in the properties of the MITKWorkbench project
(Configuration Properties -> Debugging -> Command Arguments).
Best
Stefan
From: Camille Krewcun [mailto:camille_krew...@orange.fr]
Sent: Dienstag, 31. Januar 2017 17:54
To: mitk-users@lists.sourceforge.net<mailto:mitk-users@lists.sourceforge.net>
Subject: [mitk-users] [Simulation plugin] Execution error at plugin loading
Hello everyone,
I encounter an execution error (memory access violation) when trying to launch
MITK Workbench with the simulation plugin.
This error seems to result from a call to the insertArchive method of
ctkPluginStorageSQL (relatively to org.mitk.simulation plugin), through the
updateDB method. However I have difficulties to trace back the exact cause of
the problem through the plugin loading process.
Has this situation been encountered before?
I leave more information concerning the error and my environment below.
Best regards,
Camille
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Build information:
Working on Microsoft Windows 10 Professional (original version 10240)
MITK 2016.03 release sources
CMake 3.7.0
Visual Studio 2013 Community (Update 5)
Qt 5.4.2
All third party libraries automatically downloaded and built during MITK
superbuild
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Error message:
"Unhandled exception at 0x00007FFF19064FF5 (SofaCore_1_0d.dll) in
MitkWorkbench.exe: 0xC0000005: Access violation reading location
0x00007FFF0A90F530."
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Callstack when error is triggered:
> SofaCore_1_0d.dll!boost::detail::sp_counted_base::release() Line
> 103
SofaCore_1_0d.dll!boost::detail::shared_count::~shared_count() Line 471
[External Code]
SofaCore_1_0d.dll!boost::checked_delete<sofa::core::ObjectFactory::ClassEntry>(sofa::core::ObjectFactory::ClassEntry
* x) Line 34
SofaCore_1_0d.dll!boost::detail::sp_counted_impl_p<sofa::core::ObjectFactory::ClassEntry>::dispose()
Line 79
SofaCore_1_0d.dll!boost::detail::sp_counted_base::release() Line 104
SofaCore_1_0d.dll!boost::detail::shared_count::~shared_count() Line 471
[External Code]
SofaCore_1_0d.dll!sofa::core::ObjectFactory::~ObjectFactory() Line 37
[External Code]
Qt5Cored.dll!QLibraryPrivate::unload_sys() Line 150
Qt5Cored.dll!QLibraryPrivate::unload(QLibraryPrivate::UnloadFlag flag) Line 549
Qt5Cored.dll!QPluginLoader::unload() Line 256
CTKPluginFramework.dll!ctkPluginStorageSQL::insertArchive(QSharedPointer<ctkPluginArchiveSQL>
pa, QSqlQuery * query) Line 491
CTKPluginFramework.dll!ctkPluginStorageSQL::updateDB() Line 333
CTKPluginFramework.dll!ctkPluginStorageSQL::open() Line 179
CTKPluginFramework.dll!ctkPluginStorageSQL::ctkPluginStorageSQL(ctkPluginFrameworkContext
* framework) Line 64
CTKPluginFramework.dll!ctkPluginFrameworkContext::init() Line 161
CTKPluginFramework.dll!ctkPluginFrameworkPrivate::init() Line 56
CTKPluginFramework.dll!ctkPluginFramework::start(const QFlags<enum
ctkPlugin::StartOption> & options) Line 112
CTKPluginFramework.dll!ctkPluginFrameworkLauncher::startup(QRunnable *
__formal) Line 521
CTKPluginFramework.dll!ctkPluginFrameworkLauncher::run(QRunnable *
endSplashHandler, const QVariant & argument) Line 425
MitkAppUtil.dll!mitk::BaseApplication::main(const
std::vector<std::basic_string<char,std::char_traits<char>,std::allocator<char>
>,std::allocator<std::basic_string<char,std::char_traits<char>,std::allocator<char>
> > > & args) Line 686
PocoUtild.dll!Poco::Util::Application::run() Line 333
MitkAppUtil.dll!mitk::BaseApplication::run() Line 784
MitkWorkbench.exe!main(int argc, char * * argv) Line 41
[External Code]
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