[Re-sending to mitk-users list, sorry]
Hello Huanxiang, I guess you are using the binary segmentation plugin and create separate annotation images for all your annotations? If you cannot use the multilabel segmentation plugin, which creates all annotations and layers in a single image (and hence you would be able to save it as a single NRRD file), you can still speed up exporting all the separate annotations. Select all annotation you want to export at once and then in the context menu click on Save... A sequence of Save dialogs will open for each selected image with the default name set to the annotation's name in the Data Manager. In the dialog that asks for the file type you can check the checkbox to get asked only once. Best, Stefan ________________________________ Von: Lu, Huanxiang via mitk-users <mitk-users@lists.sourceforge.net> Gesendet: Donnerstag, 23. April 2020 15:57 An: mitk-users@lists.sourceforge.net Betreff: [mitk-users] Batch exporting annotation data Hello, We now have annotators using MITK to segment images for us. Since there are many images in one annotation task and each image has many annotation layers, it is quite tedious to save each of the annotation layer manually through the UI. I am wondering if there is an easier way to export those annotations? Could it be done programmatically? Thank you, Huanxiang -- Huanxiang Lu, PhD Scientific Solution Engineering & Architecture (S2EA) Pharma Research and Early Development Informatics F. Hoffmann-La Roche Ltd Grenzacherstrasse 124 4070 Basel Switzerland Phone: +41 61 682 14 24 Confidentiality Note: This message is intended only for the use of the named recipient(s) and may contain confidential and/or privileged information. If you are not the intended recipient, please contact the sender and delete this message. Any unauthorized use of the information contained in this message is prohibited.
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