Yes, copy all your meshes to a folder, and pass the path to it to placePatch. I thought I used binary stls as well, but I might be mistaken. Make sure the Z dimname (or sample name) in the p.k.n array matches the filenames (minus .ply) since I think I that’s what it uses to match the LM array to the mesh.
M From: [email protected] [mailto:[email protected]] On Behalf Of Pere Ibáñez Sent: Thursday, March 10, 2016 7:38 AM To: MORPHMET <[email protected]> Subject: [MORPHMET] placePatch in Morpho (R) I am using the function placePatch in Morpho: placePatch(atlas, dat.array, path, prefix = NULL, fileext = ".ply", ray = TRUE, inflate = NULL, tol = inflate, relax.patch = TRUE, keep.fix = NULL, rhotol = NULL, silent = FALSE, mc.cores = 1). I already created the atlas using createAtlas, and I checked using plotAtlas and it looks fine. In placePatch, in path, I am supposed to specify the directory where the surface meshes of the sample are stored. Does this mean that I have to specify the folder where all the 3D images are? In that case, must they be in a specific format? Ascii PLY maybe? I tried specifying the folder where my images are, but it didn't work (I obtained a pxkxn array with only missing values -NAs-). May this occur because my images are Binary PLY? Thanks in advance! -- MORPHMET may be accessed via its webpage at http://www.morphometrics.org --- You received this message because you are subscribed to the Google Groups "MORPHMET" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]<mailto:[email protected]>. -- MORPHMET may be accessed via its webpage at http://www.morphometrics.org --- You received this message because you are subscribed to the Google Groups "MORPHMET" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected].
