Thanks! It worked. The problem was that, for some reason, the Z dimnames of my pxkxn array had a space at the end, so the function could not find the images in the folder because these did not have a space at the end. PLY image in binary worked fine.
El jueves, 10 de marzo de 2016, 16:20:06 (UTC), Murat Maga escribió: > > Yes, copy all your meshes to a folder, and pass the path to it to > placePatch. I thought I used binary stls as well, but I might be mistaken. > > Make sure the Z dimname (or sample name) in the p.k.n array matches the > filenames (minus .ply) since I think I that’s what it uses to match the LM > array to the mesh. > > > > M > > > > > > > > *From:* [email protected] <javascript:> [mailto: > [email protected] <javascript:>] *On Behalf Of *Pere Ibáñez > *Sent:* Thursday, March 10, 2016 7:38 AM > *To:* MORPHMET <[email protected] <javascript:>> > *Subject:* [MORPHMET] placePatch in Morpho (R) > > > > I am using the function placePatch in Morpho: placePatch(atlas, dat.array, > path, prefix = NULL, fileext = ".ply", ray = TRUE, inflate = NULL, tol = > inflate, relax.patch = TRUE, keep.fix = NULL, rhotol = NULL, silent = > FALSE, mc.cores = 1). I already created the atlas using createAtlas, and I > checked using plotAtlas and it looks fine. > > > > In placePatch, in path, I am supposed to specify the directory where the > surface meshes of the sample are stored. Does this mean that I have to > specify the folder where all the 3D images are? In that case, must they be > in a specific format? Ascii PLY maybe? > > > > I tried specifying the folder where my images are, but it didn't work (I > obtained a pxkxn array with only missing values -NAs-). May this occur > because my images are Binary PLY? > > > > Thanks in advance! > > > > -- > MORPHMET may be accessed via its webpage at http://www.morphometrics.org > --- > You received this message because you are subscribed to the Google Groups > "MORPHMET" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to [email protected] <javascript:>. > -- MORPHMET may be accessed via its webpage at http://www.morphometrics.org --- You received this message because you are subscribed to the Google Groups "MORPHMET" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected].
