Aaron Darling wrote:
Hi David,
As you point out, the ability to use nested alias files would be quite
useful. mpiblast doesn't support this at the moment, although it could
be implemented.
We had a discussion on this topic last August and I don't think much has
changed since then:
http://sourceforge.net/mailarchive/forum.php?thread_id=8014263&forum_id=43689
If it's possible to format all sequences as a single database, then a GI
list may be used to select certain portions of the database.
Hi Aaron,
that only works for NCBI databases. If you build your own or use data
libraries from elsewhere, you are stuck.
I really really like mpiblast, but because it doesnt handle fully support the
nal files, we arent using it to provide the blast service for our users - we
dont have one huge data library rather loads of sections.
Any chance of putting it on the feature request list? :-)
Regards
Aengus
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