Hi Ankit, Could you post the conents of your .ncbicr file? Also, you can try passing them as environment variables: mpirun -np 24 -x MPIBLAST_SHARED=/where/ever,MPIBLAST_LOCAL=/local/storage mpirun
-Lucas On Sunday, April 09, 2006 at 23:39 -0700, ankit patel wrote: > i think i have a problem to set the environment > variable for mpiblast. MPIBLAST_SHARED and > MPIBLAST_LOCAL. I am already set in .ncbirc file > created by me at home directory as well as in ncbi > directory but i failed to get output. so can u tell me > when i have to make .ncbirc file and what i have to > write in it. > > With Best Regards, > > Ankit Patel > > __________________________________________________ > Do You Yahoo!? > Tired of spam? Yahoo! Mail has the best spam protection around > http://mail.yahoo.com Content-Description: 1897716519-error_mpiblast.txt > $ mpirun -np 24 mpiblast -p blastn -d mm_ref_chr_intergenic.db -i > ..1G/hs_ref_chr01.IG -o mpi_hs_ref_chr01.txt > FaFatal Error: > Unable to read mpiBLAST shared storage path from either .ncbirc or the > MPIBLAST_SHARED environment variable. > The mpiBLAST configuration in .ncbirc should look like: > [mpiBLAST] > Shared=/path/to/shared/storage > Local=/path/to/local/storage > tal Error:F > FUnablFatal Error:e to raead tFatal Error: > Unable to read mpiBLAST shared > Unable to read mpiBLAST shared storage path from eitherFatal Error: > Fatal Error:Fatal Error:Unable to re > Unable to read mp > Unable to read mpiBLAST Fatal Error: > shared storage path frUnable to reaaFatal Error:Fatal Error: > Unable to read mp > Unable to riBLAST shared storaead mpiBLAST shared l storage path from either > .ncbirc or the MPI .ncbirc or the MPIBLAST_SHARED environment vFatal Error: > Unable to read mpiBLAST shared storage path from either .ncbirc or the > MPIBLAST_SHARED environment variable. > The mpiBLAST configuration in .ncbirc should look like: > [mpiBLAST] > Shared=/path/to/shared/storage > Local=/path/to/local/storage > ariable. > The mpiBLAST conFatal Error: > Unable to read mpiBLAST shared storage path from either .ncbirc or the > MPIBLAST_SHARED environment variable. > The mpiBLAST configuration in .ncbirc should look like: > [mpiBLAST] > Shared=/path/to/Fatal Error: > Unable to read mpiBLAST shared storage path from either .ncbirc or the > MPIBLAST_SHARED environment variable. > The mpiBLAST configuration in .ncbirc should look like: > [mpiBLAST] > Shared=/path/to/shared/storage > Local=/path/to/local/storage > BLAST_SHARED environment variable. > The mpiBLAST coad mpiBLAST shared storaFatal Error: > Unable to read mpiBLAST shared storage path from either .ncbirc or the > MPIBLAST_SHARED environment variable. > The mpiBLAST configuration in .ncbirc should look like: > [mpiBLAST] > Shared=/path/to/ge path from eitheiBLAST shared storagom either .ncbirc or > the MPIBLAST_SHARED enr .ncbirc or the e path from either .ncbirc or the d > mpiBLAST shared storage path from either .ncbirc or Evironmentge path from > eitherstorage path from either .n .ncbirc or thcbie MPIBLASrc or the > MPIBLAST_SHAREr variable. > The mpiBLAST configuration in .ncbirc should lofiguration in .ncbirc should > lrook like: > [mpiBLAST] > nfiguration in .ncbirc should lShared=/path/to/shared/storage > Local=/pathshared/storage > Local=/path/to/local/storage > shared/storage > Local=/path/to/local/storage > ook like: > [mpiBLAST] > ShareMPIBLAST_SHARED environment MPIBLAST_SHAok like: > [mpiBLAST] > Shared=/path/to/shared/storage > Local=variable. > TRED environment varithe MPIBLAST_SHARED environment variable. > The mpiBLAST o/path/to/loT_SHARED environmD environment variabent variable. > Thele. > The mpiBLAST conf mpiBLAST coniguration in .rcal/storage > /to/local/storage > :atal Error:d=/pa > Unable to read mpiBLAST th/to/shared/storage > Local=/path/to/local/storage > Fatal he mpiBLAST configurable. > TheFatal Error:ation in . mpiBLAST configuconfiguration in .ncbirc should loo > > Unfiguration inncbirc should .ncbirc shlook like:ould look l > [mpiBLASUable to readshared stornage path from either .nEcbirc or the > MPIBLAST_SHARED environrror: > ncbirc should lookration in mpiBLAST like:.ncbirc should lok like: > [mpiBLAST] > Shared=/path/to/shara shared ike: > [mpiBLAST] > SharedT] > Shared=/pa=/path/to/th/to/shared/shared/ststorage > Local=/bstoragment variable. > Tlhe mpiBLAST configuration in .ncUnable birc shouto read mpiBLAST shared > storage > [mpiBLAST] > Shared=/pathok like: > [e path from either .ncbirc or the MPIBLAST_SHARED environ/to/sharedmpiBLAST] > Shared=/pathed/storage > Local=/path/to/local/storage > Fatal Error:ement variable. > The mpiBLAST configuration in .ncbirc should loooragpath/to/loce > Local=/pal/storage > ath/to/locaFatal E k like: > [mpiBLAST] > Shared=/path/to/shared/storageld look likte: > [mpiBLAST] > path frShared=/pom either ./storage > Loca/to/s > Local=/path/tl=/path/hared/storage > Unable to reaoo/local/storage > l/storage > rror:Fatal E > rror:Unable to ath/to/shared/storagre > Local=/pncbiath/to/local/storage > rc or the MPIBLAST_SHARED eto/local/storage > Local=/path/to/loc > al/storage > d mpiBLAST shared storage path from either .ncbirc or the MPIBLAST_SHARED > environment variable. > The mpiBLAST configuratione > Uread mnable to repiBLAST ad mshared storage path from eithadnvironment > variable. > The mpiFatal Error:Fatal Error: > U > in .ncbirc should look like: > [mpiBLAST piBLAST shared ster .ncbir] > Shared=/path/to/shared/sorage path from either .ncbirc or the MPIBLc or the > AST_SHMPIBLASTmpBLAST configuration in .ncbirc shouldnable to read > mpiBLAUnable to rST sharead mpiBLAtorage > Local=/path/to/local/storage > iARED envir_SHAonment variable. > The mpiBLAST configuration in RED envi.ncbirronment variable. > The mpiBLASTBL look like: > [mpiBLAST] > Shaed storage path froST shared storagem either .ncb path from either .ncAc > should configuralook like: > [mpiBLAST] > Shared=/path/to/shared/tion in storage > .ncbSTred=/path/irc or thto/shared/storage > Local=/path/to/local/se MPbirc or the MPIBLAST_SHARED environmeIBLAST_SHARnt > variab Lirc shoulocal=/pathd look like: > [mpiBLAST] > Shared/to/local/storage > =/path/toshtorage > ED environment varile. > The mpiBLAST configuration in .ncbirc should look able. > The mpiBLAST confilike: > [mpa/shared/storage > Local=reguration in iBLAST] > Shared=/p.ncbircdath/to/shared/stora/path/to/local/storage > s shge > Local=/path/to/local/storage > ould look like: > [mptoriBLAST] > Shared=/path/to/shared/storage > Loagecal=/path/to/local/storage > path from either .ncbirc or the MPIBLAST_SHARED environment variable. > The mpiBLAST configuration in .ncbirc should look like: > [mpiBLAST] > Shared=/path/to/shared/storage > Local=/path/to/local/stor----------------------------------------------------------------------------- > age > One of the processes started by mpirun has exited with a nonzero exit > code. This typically indicates that the process finished in error. > If your process did not finish in error, be sure to include a "return > 0" or "exit(0)" in your C code before exiting the application. > > FPID 5953 failed on node n0 (10.10.0.1) with exit status 1. > ----------------------------------------------------------------------------- > atal Error: > Unable to read mpiBLAST shared storage path from either .ncbirc or the > MPIBLAST_SHARED environment variable. > The mpiBLAST configuration in .ncbirc should look like: > [mpiBLAST] > Shared=/path/to/shared/storage > Local=/path/to/local/storage > ------------------------------------------------------- This SF.Net email is sponsored by xPML, a groundbreaking scripting language that extends applications into web and mobile media. 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