Hi Ankit, This is probably a problem with the way lam is setup. what is the output of lamhalt -d (if its already running) lamboot -d lamnodes lamhalt -d
If lam is setup correctly then mpiblast should run on all nodes. To get a list of the nodes that mpiblast is being run on: mpirun -v -np 24 .... mpiblast .... -Lucas On Wednesday, April 12, 2006 at 03:01 -0700, ankit patel wrote: > > Hi Lucas, > Thanks for your help. Now i can run my program mpiblast. But still i > have question why mpiblast is not run on all machines? I have 12 Sun > fire v20z machines and each has two processors. But when i am running > my my job for 24 processors than it execute randomaly not on all > machines. It used hardely 8-9 processors at one time. > I used lam-mpi 7.0. Is there any problem with lam environment for > mpiblast? > Lucas Carey <[EMAIL PROTECTED]> wrote: > > Hi Ankit, > Could you post the conents of your .ncbicr file? > Also, you can try passing them as environment variables: > mpirun -np 24 -x > MPIBLAST_SHARED=/where/ever,MPIBLAST_LOCAL=/local/storage mpirun > -Lucas > On Sunday, April 09, 2006 at 23:39 -0700, ankit patel wrote: > > i think i have a problem to set the environment > > variable for mpiblast. MPIBLAST_SHARED and > > MPIBLAST_LOCAL. I am already set in .ncbirc file > > created by me at home directory as well as in ncbi > > directory but i failed to get output. so can u tell me > > when i have to make .ncbirc file and what i have to > > write in it. > > > > With Best Regards, > > > > Ankit Patel ------------------------------------------------------- This SF.Net email is sponsored by xPML, a groundbreaking scripting language that extends applications into web and mobile media. Attend the live webcast and join the prime developer group breaking into this new coding territory! http://sel.as-us.falkag.net/sel?cmd=lnk&kid=110944&bid=241720&dat=121642 _______________________________________________ Mpiblast-users mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/mpiblast-users
