Hi James,
Something appears odd with your MPI installation -- have you been
able to build and run any of the example or test MPI codes that came
with your MPI installation? Implementations such as MPICH and LAM-MPI
typically come with example codes like "cpi.c" (a simple MPI Pi
calculator) that are good for basic "does this stuff work sensibly
testing". Not sure about hpmpi but you may want to give that a
thorough workout before you try building mpiblast
Regards,
Chris
On May 2, 2006, at 4:15 PM, James Wasmuth wrote:
Dear mpiBlast developers,
I am trying to install version 1.4.0
I have successfully patched ncbi and installed it. I then go to the
mpiblast directory and
./configure --with-ncbi=/home/jwasmuth/ncbi/ --prefix=/home/
jwasmuth/bin --with-mpi=/opt/hpmpi
I get the following:
checking build system type... x86_64-unknown-linux-gnu
checking host system type... x86_64-unknown-linux-gnu
checking target system type... x86_64-unknown-linux-gnu
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking for MPI... /opt/hpmpi/bin
checking for mpicc... /opt/hpmpi/bin/mpicc
checking for mpicxx... no
checking for mpic++... no
checking for mpiCC... /opt/hpmpi/bin/mpiCC
checking for C compiler default output file name... a.out
checking whether the C compiler works... configure: error: cannot
run C compiled programs.
If you meant to cross compile, use `--host'.
See `config.log' for more details.
I 've tried all sorts to get this to work, having searched the web
for a couple of hours. Could you enlighten me?
many thanks
james
--
www.nematodes.org/~james/
Dept. Genetics and Genomic Biology
Hospital for Sick Children
101 College Street - RM 15 704
Toronto
Canada
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-------------------------------------------------------
Using Tomcat but need to do more? Need to support web services, security?
Get stuff done quickly with pre-integrated technology to make your job easier
Download IBM WebSphere Application Server v.1.0.1 based on Apache Geronimo
http://sel.as-us.falkag.net/sel?cmd=lnk&kid=120709&bid=263057&dat=121642
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