Follow-up Comment #5, bug #20834 (project mypaint):
The xorg log helped me track it down, it seems the problem was the AMD
graphics drivers I was using. Uninstalling those and using the open source
ones fixed the problem.
Before doing that I tried Gimp and Krita though, neither had the problem but
neither registered the eraser correctly either. When I re-tested on MyPaint,
the error in the Xorg log was:
fglrx(0): Restoring Recent Mode via PCS is not supported in RANDR 1.2 capable
environments.
It then has a large back trace of the error which leads to a segmentation
fault, then starts closing everything
I can provide the full error log if needed, but I suspect this is a problem
with the work AMD has done rather than the Xorg developers
Also, thanks for your help with this, doubt I would have found out what was
triggering it if you hadn't pointed me at the right error logs
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