I'm running MySQL 4.0.23 on a Debian Sarge system.

Often, when I reboot twice in a short time period, MySQL doesn't seem to
shut down gracefully -- it takes a long time for it to come up fully, and
if I reboot before that, I get a lot of log messages.  I think it takes
about an hour to come up fully, although the system is an Athlon XP 2200+
CPU with 2G RAM and not a huge amount of other activity.

My first concern is figuring out how to avoid getting hundreds of
thousands of messages in syslog -- right now grep mysql /var/log/syslog |
wc -l gives 366635 and counting just for today. The log messages look
like this:

Jul 22 16:29:01 bostoncoop mysqld[1993]: mysql tables in use 1, locked 0
Jul 22 16:29:01 bostoncoop mysqld[1993]: MySQL thread id 252, query id 8143 
localhost tpryor statistics
Jul 22 16:29:01 bostoncoop mysqld[1993]: /* LinkCache::addLinkObj */ SELECT 
page_id  FROM `page`  WHERE page_namespace = '0' AND page_title = 'Zwijnaarde'  
LIMIT 1
Jul 22 16:29:01 bostoncoop mysqld[1993]: ---TRANSACTION 0 0, not started, 
process no 1992, OS thread id 2954361776 waiting in InnoDB queue

There's also a bunch of INNODB MONITOR OUTPUT.

I'd like these messages not to get logged at all -- it's far too many to
be useful.

Second, I'd like to have MySQL log to /var/log/mysql/mysql.log rather
than syslog. my.cnf seems to be very poorly documented on this issue. It
says it is a "performance killer" to log to a specific file --
presumably, using the syslog facility gives better performance. But I
can't find any way to filter the syslog logging back to a separate log
file -- for example, by setting the syslog facility for MySQL as you can
in PostgreSQL. The only documentation in MySQL relating to syslog
facility configuration is in the clustering section, which I don't
believe has anything to do with what I'm doing.

Third, I'd like to figure out why it's taking so long for MySQL to come
up; why it doesn't go down gracefully; and why there are so many log
messages generated as it is coming up.

My my.cnf is attached -- it's fairly standard.

Thanks for any tips.
-- 
Adam Rosi-Kessel
http://adam.rosi-kessel.org
#
# The MySQL database server configuration file.
#
# You can copy this to one of:
# - "/etc/mysql/my.cnf" to set global options,
# - "/var/lib/mysql/my.cnf" to set server-specific options or
# - "~/.my.cnf" to set user-specific options.
# 
# One can use all long options that the program supports.
# Run program with --help to get a list of available options and with
# --print-defaults to see which it would actually understand and use.
#
# For explanations see
# http://dev.mysql.com/doc/mysql/en/server-system-variables.html

# This will be passed to all mysql clients
# It has been reported that passwords should be enclosed with ticks/quotes
# escpecially if they contain "#" chars...
# Remember to edit /etc/mysql/debian.cnf when changing the socket location.
[client]
port            = 3306
socket          = /var/run/mysqld/mysqld.sock

# Here is entries for some specific programs
# The following values assume you have at least 32M ram

# This was formally known as [safe_mysqld]. Both versions are currently parsed.
[mysqld_safe]
socket  = /var/run/mysqld/mysqld.sock
nice    = 0

[mysqld]
user            = mysql
pid-file        = /var/run/mysqld/mysqld.pid
socket          = /var/run/mysqld/mysqld.sock
port            = 3306
# Both location gets rotated by the cronjob.
# Be aware that this log type is a performance killer.
#log            = /var/log/mysql.log
#log            = /var/log/mysql/mysql.log
#err-log        = /var/log/mysql/mysql.err
basedir         = /usr
datadir         = /var/lib/mysql
tmpdir          = /tmp
language        = /usr/share/mysql/english
max_connections = 200
default-table-type = innodb 
skip-external-locking
#
# Instead of skip-networking the default is now to listen only on
# localhost which is more compatible and is not less secure.
bind-address            = 127.0.0.1
key_buffer              = 16M
max_allowed_packet      = 16M
thread_stack            = 128K
#
# Query Cache Configuration
#
query_cache_limit       = 1048576
query_cache_size        = 16777216
query_cache_type        = 1
#
# Here you can see queries with especially long duration
#log-slow-queries       = /var/log/mysql/mysql-slow.log
#
# The following can be used as easy to replay backup logs or for replication.
#server-id              = 1
log-bin                 = /var/log/mysql/mysql-bin.log
# See /etc/mysql/debian-log-rotate.conf for the number of files kept.
max_binlog_size         = 104857600
#binlog-do-db           = include_database_name
#binlog-ignore-db       = include_database_name
#
#
# InnoDB is enabled by default with a 10MB datafile in /var/lib/mysql/.
# Read the manual for more InnoDB related options. There are many!
#
# Read the manual, too, if you want chroot!
# chroot = /var/lib/mysql/
#
# If you want to enable SSL support (recommended) read the manual or my
# HOWTO in /usr/share/doc/mysql-server/SSL-MINI-HOWTO.txt.gz
# ssl-ca=/etc/mysql/cacert.pem
# ssl-cert=/etc/mysql/server-cert.pem
# ssl-key=/etc/mysql/server-key.pem



[mysqldump]
quick
quote-names
max_allowed_packet      = 16M

[mysql]
#no-auto-rehash # faster start of mysql but no tab completition

[isamchk]
key_buffer              = 16M

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