Hi Edward,
Thanks so much for your response. Attached is the response from the
relax -i command.
Let me know how to fix this issue,
Ranabir
On 2020-09-29 19:06, Edward d'Auvergne wrote:
> On Fri, 25 Sep 2020 at 19:58, rana <[email protected]> wrote:
>
>> I am working with Relax 4.1.3. Tried the "single_model.py" script on some
>> Ubiquitin data from our lab. I am getting an error
>>
>> File "/opt/python2.7/lib/python2.7/site-packages/minfx/grid.py", line 158,
>> in grid
>> if A != None and b != None:
>> ValueError: The truth value of an array with more than one element is
>> ambiguous. Use a.any() or a.all()
>
> Hi Ranabir,
>
> Thank you for sending this to the relax users mailing list. I've been
> looking into this and I do not understand what is happening. The
> error you see was removed back in 2015 (back when it was instead a
> depreciation warning). The commit is:
>
> https://sourceforge.net/p/minfx/code/ci/14f3ffa68558e613b21a3c69eabd69ee177586fe/
>
> The version of relax you are using should not experience this error.
> I wonder if there are multiple versions of minfx installed on your
> system. Could you copy and paste the output of the following command
> into an email:
>
> $ relax -i
>
> This will list all the installed packages. The expected result is
> that minfx is found by relax within the relax source directories.
> However I guess that this command will show that there is an old minfx
> Python site-package installed which is somehow being loaded.
>
> Cheers,
>
> Edward
--------------------------------------------------------------------------------------------------------------------------------------
relax 4.1.3
Molecular dynamics by NMR data analysis
Copyright (C) 2001-2006 Edward d'Auvergne
Copyright (C) 2006-2019 the relax development
team
This is free software which you are welcome to modify and redistribute
under the conditions of the
GNU General Public License (GPL), Version 3 or any later version
published by the Free Software
Foundation. This program, including all modules, is licensed under the
GPL and comes with
absolutely no warranty. For details type 'GPL' within the relax prompt.
Assistance in using the relax prompt and scripting interface can be
accessed by typing 'help' within
the prompt.
Processor fabric: Uni-processor.
Hardware information:
Machine: x86_64
Processor: x86_64
Processor name: Intel(R) Xeon(R) CPU E5-1603 0 @ 2.80GHz
Endianness: little
Total RAM size: 64311 Mb
Total swap size: 32255 Mb
Operating system information:
System: Linux
Release: 2.6.32-431.29.2.el6.x86_64
Version: #1 SMP Sun Jul 27 15:55:46 EDT 2014
GNU/Linux version: Red Hat Enterprise Linux Workstation 6.5
Santiago
Distribution: redhat 6.5 Santiago
Full platform string:
Linux-2.6.32-431.29.2.el6.x86_64-x86_64-with-redhat-6.5-Santiago
Python information:
Architecture: 64bit ELF
Python version: 2.7.17
Python branch:
Python build: default, Dec 27 2019 10:50:24
Python compiler: GCC 4.4.7 20120313 (Red Hat 4.4.7-16)
Libc version: glibc 2.2.5
Python implementation: CPython
Python revision:
Python executable: /opt/python2.7/bin/python
Python flags: sys.flags(debug=0, py3k_warning=0,
division_warning=0, division_new=0, inspect=0, interactive=0,
optimize=0, dont_write_bytecode=0, no_user_site=0, no_site=0,
ignore_environment=0, tabcheck=0, verbose=0, unicode=0, bytes_warning=0,
hash_randomization=0)
Python float info: sys.float_info(max=1.7976931348623157e+308,
max_exp=1024, max_10_exp=308, min=2.2250738585072014e-308,
min_exp=-1021, min_10_exp=-307, dig=15, mant_dig=53,
epsilon=2.220446049250313e-16, radix=2, rounds=1)
Python module path: ['/opt/relax-4.1.3',
'/opt/python2.7/lib/python27.zip', '/opt/python2.7/lib/python2.7',
'/opt/python2.7/lib/python2.7/plat-linux2',
'/opt/python2.7/lib/python2.7/lib-tk',
'/opt/python2.7/lib/python2.7/lib-old',
'/opt/python2.7/lib/python2.7/lib-dynload',
'/opt/python2.7/lib/python2.7/site-packages']
Python packages and modules (most are optional):
Name Installed Version Path
minfx True 1.0.11
/opt/python2.7/lib/python2.7/site-packages/minfx
bmrblib True 1.0.4
/opt/python2.7/lib/python2.7/site-packages/bmrblib
numpy True 1.16.5
/opt/python2.7/lib/python2.7/site-packages/numpy
scipy True 1.2.2
/opt/python2.7/lib/python2.7/site-packages/scipy
wxPython False
matplotlib False
mpi4py False
epydoc False
optparse True 1.5.3
/opt/python2.7/lib/python2.7/optparse.pyc
readline True
/opt/python2.7/lib/python2.7/lib-dynload/readline.so
profile True
/opt/python2.7/lib/python2.7/profile.pyc
bz2 True
/opt/python2.7/lib/python2.7/lib-dynload/bz2.so
gzip True
/opt/python2.7/lib/python2.7/gzip.pyc
io True
/opt/python2.7/lib/python2.7/io.pyc
xml True 0.8.4 (internal)
/opt/python2.7/lib/python2.7/xml/__init__.pyc
xml.dom.minidom True
/opt/python2.7/lib/python2.7/xml/dom/minidom.pyc
relax information:
Version: 4.1.3
Processor fabric: Uni-processor.
relax C modules:
Module Compiled File type Path
target_functions.relax_fit True
/opt/relax-4.1.3/target_functions/relax_fit.so
--
Ranabir Das_______________________________________________
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