On Tue, 29 Sep 2020 at 17:15, rana <[email protected]> wrote: > Hi Edward, > > Thanks so much for your response. Attached is the response from the relax -i > command. > > Let me know how to fix this issue, > > > -------------------------------------------------------------------------------------------------------------------------------------- > > relax 4.1.3 > > Molecular dynamics by NMR data analysis > > Copyright (C) 2001-2006 Edward d'Auvergne > Copyright (C) 2006-2019 the relax development team > > This is free software which you are welcome to modify and redistribute under > the conditions of the > GNU General Public License (GPL), Version 3 or any later version published by > the Free Software > Foundation. This program, including all modules, is licensed under the GPL > and comes with > absolutely no warranty. For details type 'GPL' within the relax prompt. > > Assistance in using the relax prompt and scripting interface can be accessed > by typing 'help' within > the prompt. > > Processor fabric: Uni-processor. > > > Hardware information: > Machine: x86_64 > Processor: x86_64 > Processor name: Intel(R) Xeon(R) CPU E5-1603 0 @ 2.80GHz > Endianness: little > Total RAM size: 64311 Mb > Total swap size: 32255 Mb > > Operating system information: > System: Linux > Release: 2.6.32-431.29.2.el6.x86_64 > Version: #1 SMP Sun Jul 27 15:55:46 EDT 2014 > GNU/Linux version: Red Hat Enterprise Linux Workstation 6.5 Santiago > Distribution: redhat 6.5 Santiago > Full platform string: > Linux-2.6.32-431.29.2.el6.x86_64-x86_64-with-redhat-6.5-Santiago > > Python information: > Architecture: 64bit ELF > Python version: 2.7.17 > Python branch: > Python build: default, Dec 27 2019 10:50:24 > Python compiler: GCC 4.4.7 20120313 (Red Hat 4.4.7-16) > Libc version: glibc 2.2.5 > Python implementation: CPython > Python revision: > Python executable: /opt/python2.7/bin/python > Python flags: sys.flags(debug=0, py3k_warning=0, > division_warning=0, division_new=0, inspect=0, interactive=0, optimize=0, > dont_write_bytecode=0, no_user_site=0, no_site=0, ignore_environment=0, > tabcheck=0, verbose=0, unicode=0, bytes_warning=0, hash_randomization=0) > Python float info: sys.float_info(max=1.7976931348623157e+308, > max_exp=1024, max_10_exp=308, min=2.2250738585072014e-308, min_exp=-1021, > min_10_exp=-307, dig=15, mant_dig=53, epsilon=2.220446049250313e-16, radix=2, > rounds=1) > Python module path: ['/opt/relax-4.1.3', > '/opt/python2.7/lib/python27.zip', '/opt/python2.7/lib/python2.7', > '/opt/python2.7/lib/python2.7/plat-linux2', > '/opt/python2.7/lib/python2.7/lib-tk', > '/opt/python2.7/lib/python2.7/lib-old', > '/opt/python2.7/lib/python2.7/lib-dynload', > '/opt/python2.7/lib/python2.7/site-packages'] > > Python packages and modules (most are optional): > > Name Installed Version Path > minfx True 1.0.11 > /opt/python2.7/lib/python2.7/site-packages/minfx > bmrblib True 1.0.4 > /opt/python2.7/lib/python2.7/site-packages/bmrblib > numpy True 1.16.5 > /opt/python2.7/lib/python2.7/site-packages/numpy > scipy True 1.2.2 > /opt/python2.7/lib/python2.7/site-packages/scipy > wxPython False > matplotlib False > mpi4py False > epydoc False > optparse True 1.5.3 > /opt/python2.7/lib/python2.7/optparse.pyc > readline True > /opt/python2.7/lib/python2.7/lib-dynload/readline.so > profile True > /opt/python2.7/lib/python2.7/profile.pyc > bz2 True > /opt/python2.7/lib/python2.7/lib-dynload/bz2.so > gzip True > /opt/python2.7/lib/python2.7/gzip.pyc > io True > /opt/python2.7/lib/python2.7/io.pyc > xml True 0.8.4 (internal) > /opt/python2.7/lib/python2.7/xml/__init__.pyc > xml.dom.minidom True > /opt/python2.7/lib/python2.7/xml/dom/minidom.pyc > > relax information: > Version: 4.1.3 > Processor fabric: Uni-processor. > > relax C modules: > > Module Compiled File type Path > target_functions.relax_fit True > /opt/relax-4.1.3/target_functions/relax_fit.so
This is what I thought. Your relax installation is not using the minfx and bmrblib versions that come with it. Can you also paste the output of: $ ls -alh /opt/relax-4.1.3 This should show a minfx/ and bmrblib/ directory, but my guess is that those are not present. The minfx version being used is a Python installed site-package. However the version being used is too old and no longer functional with modern numpy. Minfx is up to version 1.0.12 [1], and it is that version that must now be used. Did you install this yourself? Do you know how it was installed? Regards, Edward [1] https://sourceforge.net/p/minfx/code/ref/master/tags/ _______________________________________________ nmr-relax-users mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/nmr-relax-users
