I know this is a NONMEM list server, but, need help with xpose, hope you'll
indulge me. Moving to the latest xpose (from xpose4). I ran a model (using PSN,
execute), model file called run001.mod, the $TABLE records are:
$TABLE ID TIME TAD IPRED IWRES NOPRINT ONEHEADER FILE=sdtab001
$TABLE ID K S2 KA CL ETA1 ETA2 ETA3 NOPRINT NOAPPEND ONEHEADER
FILE=patab001
$TABLE ID STDY SEXN RACEN XXXXX XXXXXX NOPRINT NOAPPEND
ONEHEADER FILE=catab001
$TABLE ID AGE XXXXX XXXXX XXXX XXXXX
NOPRINT NOAPPEND ONEHEADER FILE=cotab001
$TABLE ID TIME DV EVID CWRES IWRES XXXX IPRED NOPRINT NOAPPEND
ONEHEADER FILE=cwtab001
I'm trying to load the data in to xpose, with command:
xpdb <- xpose::xpose_data(runno = '001')
getting this ouput:
Looking for nonmem output tables.
Reading: sdtab001, patab001, catab001, cotab001, cwtab001 [$prob no.1]
Looking for nonmem output files
Reading: run001.ext, run001.phi
Warning messages:
1: No tidyselect variables were registered
2: Failed to create run summary. No tidyselect variables were registered
3: No tidyselect variables were registered
I think all the required files are there:
Volume in drive E is New Volume
Volume Serial Number is CC55-6FD7
Directory of E:\msale\XXX\xpose
02/14/2020 03:23 PM 564,745 catab001
02/14/2020 03:23 PM 731,389 cotab001
02/14/2020 03:23 PM 675,841 cwtab001
02/14/2020 03:23 PM 675,841 patab001
02/14/2020 03:23 PM 14 run001.cpu
02/14/2020 03:23 PM 3,615 run001.ext
02/14/2020 03:23 PM 1,857 run001.log
02/14/2020 03:23 PM 18,201 run001.lst
02/14/2020 03:19 PM 3,620 run001.mod
02/14/2020 03:23 PM 173,746 run001.phi
02/14/2020 03:23 PM 1,197 run001.shk
02/14/2020 03:23 PM 37,664 run001.shm
02/14/2020 03:23 PM 20,400 run001.xml
02/14/2020 03:23 PM 509,197 sdtab001
14 File(s) 3,417,327 bytes
0 Dir(s) 59,120,144,384 bytes free
Base on a search for this error, it looks like it comes from dplyr. I'm running
dplyr version 0.8.4, xpose version 0.4.7 and R version 3.6.2 with R Studio,
under Windows 10.
I've tried it with and without the NOAPPEND in the $TABLE records.
Any suggestions would be appreciated.
Mark Sale M.D.
Senior Vice President, Pharmacometrics
Nuventra Inc.
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Phone (919)-973-0383
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