Hi Mark,
The tidyselect package has recently undergone some significant changes. I would guess that may have caused an issue with xpose which heavily uses the tidyverse. As Duy indicated, I’d suggest posting an issue to GitHub so that Ben can help. Thanks, Bill *From:* owner-nmus...@globomaxnm.com <owner-nmus...@globomaxnm.com> *On Behalf Of *Duy Tran *Sent:* Friday, February 14, 2020 4:04 PM *To:* Mark Sale <ms...@nuventra.com> *Cc:* nmusers@globomaxnm.com *Subject:* Re: [NMusers] error message from xpose Hi Mark, Can you try specifying more in the arguments for the function xpose::xpose_data? I typically include these below when I run xpose on R: xpdb <- xpose_data(runno = "001", ext = ".lst", prefix = "run", dir = "./ msale/XXX/xpose") If it doesn't work, can you post this issue on https://github.com/UUPharmacometrics/xpose/issues for the xpose package developer to help? -Duy Tran On Fri, Feb 14, 2020 at 12:41 PM Mark Sale <ms...@nuventra.com> wrote: I know this is a NONMEM list server, but, need help with xpose, hope you'll indulge me. Moving to the latest xpose (from xpose4). I ran a model (using PSN, execute), model file called run001.mod, the $TABLE records are: $TABLE ID TIME TAD IPRED IWRES NOPRINT ONEHEADER FILE=sdtab001 $TABLE ID K S2 KA CL ETA1 ETA2 ETA3 NOPRINT NOAPPEND ONEHEADER FILE=patab001 $TABLE ID STDY SEXN RACEN XXXXX XXXXXX NOPRINT NOAPPEND ONEHEADER FILE=catab001 $TABLE ID AGE XXXXX XXXXX XXXX XXXXX NOPRINT NOAPPEND ONEHEADER FILE=cotab001 $TABLE ID TIME DV EVID CWRES IWRES XXXX IPRED NOPRINT NOAPPEND ONEHEADER FILE=cwtab001 I'm trying to load the data in to xpose, with command: xpdb <- xpose::xpose_data(runno = '001') getting this ouput: Looking for nonmem output tables. Reading: sdtab001, patab001, catab001, cotab001, cwtab001 [$prob no.1] Looking for nonmem output files Reading: run001.ext, run001.phi Warning messages: 1: No tidyselect variables were registered 2: Failed to create run summary. No tidyselect variables were registered 3: No tidyselect variables were registered I think all the required files are there: Volume in drive E is New Volume Volume Serial Number is CC55-6FD7 Directory of E:\msale\XXX\xpose 02/14/2020 03:23 PM 564,745 catab001 02/14/2020 03:23 PM 731,389 cotab001 02/14/2020 03:23 PM 675,841 cwtab001 02/14/2020 03:23 PM 675,841 patab001 02/14/2020 03:23 PM 14 run001.cpu 02/14/2020 03:23 PM 3,615 run001.ext 02/14/2020 03:23 PM 1,857 run001.log 02/14/2020 03:23 PM 18,201 run001.lst 02/14/2020 03:19 PM 3,620 run001.mod 02/14/2020 03:23 PM 173,746 run001.phi 02/14/2020 03:23 PM 1,197 run001.shk 02/14/2020 03:23 PM 37,664 run001.shm 02/14/2020 03:23 PM 20,400 run001.xml 02/14/2020 03:23 PM 509,197 sdtab001 14 File(s) 3,417,327 bytes 0 Dir(s) 59,120,144,384 bytes free Base on a search for this error, it looks like it comes from dplyr. I'm running dplyr version 0.8.4, xpose version 0.4.7 and R version 3.6.2 with R Studio, under Windows 10. I've tried it with and without the NOAPPEND in the $TABLE records. Any suggestions would be appreciated. Mark Sale M.D. Senior Vice President, Pharmacometrics Nuventra Inc. 2525 Meridian Parkway, Suite 200 Durham, NC 27713 Phone (919)-973-0383 ms...@nuventra.com <http://ms...@kinetigen.com> *Upcoming Events:* *Webinar: <https://www.nuventra.com/resources/events/webinar-clinical-pharmacology-101-part-1/>* Clinical Pharmacology 101 | January 30 | 1pm EST ASCPT Annual Meeting: <https://www.nuventra.com/resources/events/ascpt-annual-meeting-2020/> March 18 - 21 | Houston, TX | Booth #205 *Check out our* *10 Best Blogs of 2019 <https://www.nuventra.com/10-best-blogs-of-2019/>.* CONFIDENTIALITY NOTICE The information in this transmittal (including attachments, if any) may be privileged and confidential and is intended only for the recipient(s) listed above. Any review, use, disclosure, distribution or copying of this transmittal, in any form, is prohibited except by or on behalf of the intended recipient(s). If you have received this transmittal in error, please notify me immediately by reply email and destroy all copies of the transmittal.
