See <https://builds.apache.org/job/ctakes-trunk-Java-1.9/12/display/redirect?page=changes>
Changes: [seanfinan] Allow comma-separated semantic group codes in blacklist files. [seanfinan] Change from deprecated FileLocator.locateFile(..) to getFile(..) Remove use of deprecated getCasInitializer() [seanfinan] CTAKES-470 : throw exception (and exit) if piper cannot be loaded. Exceptions saved to log file. ------------------------------------------ [...truncated 318.76 KB...] A ctakes-dependency-parser/src/main/java/org/apache/ctakes/dependency/parser/ae/shared A ctakes-dependency-parser/src/main/java/org/apache/ctakes/dependency/parser/ae/shared/SRLSharedParserModel.java A ctakes-dependency-parser/src/main/java/org/apache/ctakes/dependency/parser/ae/shared/DependencySharedModel.java A ctakes-dependency-parser/src/main/java/org/apache/ctakes/dependency/parser/ae/shared/SRLSharedModel.java A ctakes-dependency-parser/src/main/java/org/apache/ctakes/dependency/parser/ae/shared/SRLSharedPredictionModel.java A ctakes-dependency-parser/src/main/java/org/apache/ctakes/dependency/parser/ae/shared/SRLSharedRoleModel.java A ctakes-dependency-parser/src/main/java/org/apache/ctakes/dependency/parser/ae/shared/LemmatizerSharedModel.java A ctakes-dependency-parser/src/main/java/org/apache/ctakes/dependency/parser/util A ctakes-dependency-parser/src/main/java/org/apache/ctakes/dependency/parser/util/ClearDependencyUtility.java A ctakes-dependency-parser/src/main/java/org/apache/ctakes/dependency/parser/util/DependencyRegex.java A ctakes-dependency-parser/src/main/java/org/apache/ctakes/dependency/parser/util/Delim.java A ctakes-dependency-parser/src/main/java/org/apache/ctakes/dependency/parser/util/DependencyPath.java A ctakes-dependency-parser/src/main/java/org/apache/ctakes/dependency/parser/util/DependencyUtility.java A ctakes-dependency-parser/src/main/java/org/apache/ctakes/dependency/parser/util/AnnotationDepUtils.java A ctakes-dependency-parser/src/main/java/org/apache/ctakes/dependency/parser/util/SRLUtility.java A ctakes-dependency-parser/src/main/java/META-INF A ctakes-dependency-parser/src/main/java/META-INF/org.apache.uima.fit A ctakes-dependency-parser/src/main/java/META-INF/org.apache.uima.fit/types.txt A ctakes-dependency-parser/src/test A ctakes-dependency-parser/src/test/java A ctakes-dependency-parser/src/test/java/org A ctakes-dependency-parser/src/test/java/org/apache A ctakes-dependency-parser/src/test/java/org/apache/ctakes A ctakes-dependency-parser/src/test/java/org/apache/ctakes/dependency A ctakes-dependency-parser/src/test/java/org/apache/ctakes/dependency/parser A ctakes-dependency-parser/src/test/java/org/apache/ctakes/dependency/parser/ae A ctakes-dependency-parser/src/test/java/org/apache/ctakes/dependency/parser/ae/util A ctakes-dependency-parser/src/test/java/org/apache/ctakes/dependency/parser/ae/util/TestClearNLPAnalysisEngines.java A ctakes-dependency-parser/pom.xml A ctakes-dependency-parser/resources A ctakes-temporal-res A ctakes-temporal-res/LICENSE A ctakes-temporal-res/src A ctakes-temporal-res/src/test A ctakes-temporal-res/src/main A ctakes-temporal-res/src/main/resources A ctakes-temporal-res/src/main/resources/eventDict.txt A ctakes-temporal-res/src/main/resources/org A ctakes-temporal-res/src/main/resources/org/apache A ctakes-temporal-res/src/main/resources/org/apache/ctakes A ctakes-temporal-res/src/main/resources/org/apache/ctakes/temporal A ctakes-temporal-res/src/main/resources/org/apache/ctakes/temporal/ae A ctakes-temporal-res/src/main/resources/org/apache/ctakes/temporal/ae/doctimerel AU ctakes-temporal-res/src/main/resources/org/apache/ctakes/temporal/ae/doctimerel/model.jar A ctakes-temporal-res/src/main/resources/org/apache/ctakes/temporal/ae/eventannotator AU ctakes-temporal-res/src/main/resources/org/apache/ctakes/temporal/ae/eventannotator/model.jar A ctakes-temporal-res/src/main/resources/org/apache/ctakes/temporal/ae/contextualmodality AU ctakes-temporal-res/src/main/resources/org/apache/ctakes/temporal/ae/contextualmodality/model.jar A ctakes-temporal-res/src/main/resources/org/apache/ctakes/temporal/ae/eventtime AU ctakes-temporal-res/src/main/resources/org/apache/ctakes/temporal/ae/eventtime/model.jar AU ctakes-temporal-res/src/main/resources/org/apache/ctakes/temporal/ae/eventtime/Event_Time_with_UMLS_filter.txt AU ctakes-temporal-res/src/main/resources/org/apache/ctakes/temporal/ae/eventtime/Event_Time_no_UMLS_filter.txt AU ctakes-temporal-res/src/main/resources/org/apache/ctakes/temporal/ae/eventtime/READEME.txt A ctakes-temporal-res/src/main/resources/org/apache/ctakes/temporal/ae/eventevent AU ctakes-temporal-res/src/main/resources/org/apache/ctakes/temporal/ae/eventevent/Event_Event_UMLS_doubleFilter_useSystemEvents.txt AU ctakes-temporal-res/src/main/resources/org/apache/ctakes/temporal/ae/eventevent/model.jar AU ctakes-temporal-res/src/main/resources/org/apache/ctakes/temporal/ae/eventevent/READEME.txt A ctakes-temporal-res/src/main/resources/org/apache/ctakes/temporal/ae/salience AU ctakes-temporal-res/src/main/resources/org/apache/ctakes/temporal/ae/salience/model.jar A ctakes-temporal-res/src/main/resources/org/apache/ctakes/temporal/ae/section AU ctakes-temporal-res/src/main/resources/org/apache/ctakes/temporal/ae/section/ccda_sections.txt A ctakes-temporal-res/src/main/resources/org/apache/ctakes/temporal/ae/timeannotator AU ctakes-temporal-res/src/main/resources/org/apache/ctakes/temporal/ae/timeannotator/model.jar A ctakes-temporal-res/src/main/resources/org/apache/ctakes/temporal/pipeline A ctakes-temporal-res/src/main/resources/org/apache/ctakes/temporal/pipeline/TemporalSubPipe.piper A ctakes-temporal-res/pom.xml A LICENSE A ctakes-drug-ner-res A ctakes-drug-ner-res/pom.xml A ctakes-drug-ner-res/LICENSE A ctakes-drug-ner-res/src A ctakes-drug-ner-res/src/test A ctakes-drug-ner-res/src/main A ctakes-drug-ner-res/src/main/resources A ctakes-drug-ner-res/src/main/resources/org A ctakes-drug-ner-res/src/main/resources/org/apache A ctakes-drug-ner-res/src/main/resources/org/apache/ctakes A ctakes-drug-ner-res/src/main/resources/org/apache/ctakes/drugner A ctakes-drug-ner-res/src/main/resources/org/apache/ctakes/drugner/tokenizer A ctakes-drug-ner-res/src/main/resources/org/apache/ctakes/drugner/tokenizer/hyphen_freq.txt A ctakes-drug-ner-res/src/main/resources/org/apache/ctakes/drugner/types A ctakes-drug-ner-res/src/main/resources/org/apache/ctakes/drugner/types/TypeSystem.xml A ctakes-drug-ner-res/src/main/resources/org/apache/ctakes/drugner/lookup A ctakes-drug-ner-res/src/main/resources/org/apache/ctakes/drugner/lookup/LookupDesc_DrugNER.xml A ctakes-gui-res A ctakes-gui-res/src A ctakes-gui-res/src/test A ctakes-gui-res/src/test/java A ctakes-gui-res/src/main A ctakes-gui-res/src/main/resources A ctakes-gui-res/src/main/resources/org A ctakes-gui-res/src/main/resources/org/apache A ctakes-gui-res/src/main/resources/org/apache/ctakes A ctakes-gui-res/src/main/resources/org/apache/ctakes/gui A ctakes-gui-res/src/main/resources/org/apache/ctakes/gui/dictionary A ctakes-gui-res/src/main/resources/org/apache/ctakes/gui/dictionary/data A ctakes-gui-res/src/main/resources/org/apache/ctakes/gui/dictionary/data/small A ctakes-gui-res/src/main/resources/org/apache/ctakes/gui/dictionary/data/small/UnwantedSuffixes.txt A ctakes-gui-res/src/main/resources/org/apache/ctakes/gui/dictionary/data/small/CtakesSnomedTuis.txt A ctakes-gui-res/src/main/resources/org/apache/ctakes/gui/dictionary/data/small/RightAbbreviations.txt A ctakes-gui-res/src/main/resources/org/apache/ctakes/gui/dictionary/data/small/RemovalColonTriggers.txt A ctakes-gui-res/src/main/resources/org/apache/ctakes/gui/dictionary/data/small/ConversionSources.txt A ctakes-gui-res/src/main/resources/org/apache/ctakes/gui/dictionary/data/small/RemovalPrefixTriggers.txt A ctakes-gui-res/src/main/resources/org/apache/ctakes/gui/dictionary/data/small/ModifierSuffixes.txt A ctakes-gui-res/src/main/resources/org/apache/ctakes/gui/dictionary/data/small/UnwantedPrefixes.txt A ctakes-gui-res/src/main/resources/org/apache/ctakes/gui/dictionary/data/small/CtakesSources.txt A ctakes-gui-res/src/main/resources/org/apache/ctakes/gui/dictionary/data/small/CtakesDrugTuis.txt A ctakes-gui-res/src/main/resources/org/apache/ctakes/gui/dictionary/data/small/RemovalSuffixTriggers.txt A ctakes-gui-res/src/main/resources/org/apache/ctakes/gui/dictionary/data/tim A ctakes-gui-res/src/main/resources/org/apache/ctakes/gui/dictionary/data/tim/RightAbbreviations.txt A ctakes-gui-res/src/main/resources/org/apache/ctakes/gui/dictionary/data/tim/RemovalColonTriggers.txt A ctakes-gui-res/src/main/resources/org/apache/ctakes/gui/dictionary/data/tim/emptyAnatTuis.txt A ctakes-gui-res/src/main/resources/org/apache/ctakes/gui/dictionary/data/tim/ConversionSources.txt A ctakes-gui-res/src/main/resources/org/apache/ctakes/gui/dictionary/data/tim/RemovalPrefixTriggers.txt A ctakes-gui-res/src/main/resources/org/apache/ctakes/gui/dictionary/data/tim/TimNonDrugSources.txt A ctakes-gui-res/src/main/resources/org/apache/ctakes/gui/dictionary/data/tim/ModifierSuffixes.txt A ctakes-gui-res/src/main/resources/org/apache/ctakes/gui/dictionary/data/tim/UnwantedPrefixes.txt A ctakes-gui-res/src/main/resources/org/apache/ctakes/gui/dictionary/data/tim/TimDrugTuis.txt A ctakes-gui-res/src/main/resources/org/apache/ctakes/gui/dictionary/data/tim/TimOtherTuis.txt A ctakes-gui-res/src/main/resources/org/apache/ctakes/gui/dictionary/data/tim/RemovalSuffixTriggers.txt A ctakes-gui-res/src/main/resources/org/apache/ctakes/gui/dictionary/data/tim/RemovalFunctionTriggers.txt A ctakes-gui-res/src/main/resources/org/apache/ctakes/gui/dictionary/data/tim/UnwantedSuffixes.txt A ctakes-gui-res/src/main/resources/org/apache/ctakes/gui/dictionary/data/tim/TimSpecificTuis.txt A ctakes-gui-res/src/main/resources/org/apache/ctakes/gui/dictionary/data/tiny A ctakes-gui-res/src/main/resources/org/apache/ctakes/gui/dictionary/data/tiny/RemovalColonTriggers.txt A ctakes-gui-res/src/main/resources/org/apache/ctakes/gui/dictionary/data/tiny/KeepPrefixTriggers.txt A ctakes-gui-res/src/main/resources/org/apache/ctakes/gui/dictionary/data/tiny/UnwantedCuis.txt A ctakes-gui-res/src/main/resources/org/apache/ctakes/gui/dictionary/data/tiny/ModifierSuffixes.txt A ctakes-gui-res/src/main/resources/org/apache/ctakes/gui/dictionary/data/tiny/UnwantedTexts.txt A ctakes-gui-res/src/main/resources/org/apache/ctakes/gui/dictionary/data/tiny/CtakesSources.txt A ctakes-gui-res/src/main/resources/org/apache/ctakes/gui/dictionary/data/tiny/RemovalFunctionTriggers.txt A ctakes-gui-res/src/main/resources/org/apache/ctakes/gui/dictionary/data/tiny/CtakesAnatTuis.txt A ctakes-gui-res/src/main/resources/org/apache/ctakes/gui/dictionary/data/tiny/CtakesSnomedTuis.txt A ctakes-gui-res/src/main/resources/org/apache/ctakes/gui/dictionary/data/tiny/RightAbbreviations.txt A ctakes-gui-res/src/main/resources/org/apache/ctakes/gui/dictionary/data/tiny/ConversionSources.txt A ctakes-gui-res/src/main/resources/org/apache/ctakes/gui/dictionary/data/tiny/RemovalPrefixTriggers.txt A ctakes-gui-res/src/main/resources/org/apache/ctakes/gui/dictionary/data/tiny/UnwantedPrefixes.txt A ctakes-gui-res/src/main/resources/org/apache/ctakes/gui/dictionary/data/tiny/CtakesDrugTuis.txt A ctakes-gui-res/src/main/resources/org/apache/ctakes/gui/dictionary/data/tiny/RemovalSuffixTriggers.txt A ctakes-gui-res/src/main/resources/org/apache/ctakes/gui/dictionary/data/tiny/UnwantedSuffixes.txt A ctakes-gui-res/src/main/resources/org/apache/ctakes/gui/dictionary/data/default A ctakes-gui-res/src/main/resources/org/apache/ctakes/gui/dictionary/data/default/CtakesDrugTuis.txt A ctakes-gui-res/src/main/resources/org/apache/ctakes/gui/dictionary/data/default/RemovalSuffixTriggers.txt A ctakes-gui-res/src/main/resources/org/apache/ctakes/gui/dictionary/data/default/RemovalFunctionTriggers.txt A ctakes-gui-res/src/main/resources/org/apache/ctakes/gui/dictionary/data/default/UnwantedSuffixes.txt A ctakes-gui-res/src/main/resources/org/apache/ctakes/gui/dictionary/data/default/CtakesSnomedTuis.txt A ctakes-gui-res/src/main/resources/org/apache/ctakes/gui/dictionary/data/default/RightAbbreviations.txt A ctakes-gui-res/src/main/resources/org/apache/ctakes/gui/dictionary/data/default/RemovalColonTriggers.txt A ctakes-gui-res/src/main/resources/org/apache/ctakes/gui/dictionary/data/default/ConversionSources.txt A ctakes-gui-res/src/main/resources/org/apache/ctakes/gui/dictionary/data/default/RemovalPrefixTriggers.txt A ctakes-gui-res/src/main/resources/org/apache/ctakes/gui/dictionary/data/default/ModifierSuffixes.txt A ctakes-gui-res/src/main/resources/org/apache/ctakes/gui/dictionary/data/default/UnwantedPrefixes.txt A ctakes-gui-res/src/main/resources/org/apache/ctakes/gui/dictionary/data/default/CtakesSources.txt A ctakes-gui-res/src/main/resources/org/apache/ctakes/gui/dictionary/data/optional A ctakes-gui-res/src/main/resources/org/apache/ctakes/gui/dictionary/data/optional/CtakesFindTuis.txt A ctakes-gui-res/src/main/resources/org/apache/ctakes/gui/dictionary/data/optional/CtakesAnatTuis.txt A ctakes-gui-res/src/main/resources/org/apache/ctakes/gui/dictionary/data/optional/CtakesProcTuis.txt A ctakes-gui-res/src/main/resources/org/apache/ctakes/gui/dictionary/data/optional/CtakesAllTuis.txt A ctakes-gui-res/src/main/resources/org/apache/ctakes/gui/dictionary/data/optional/UmlsAllSources.txt A ctakes-gui-res/src/main/resources/org/apache/ctakes/gui/dictionary/data/optional/CtakesDisoTuis.txt A ctakes-gui-res/src/main/resources/org/apache/ctakes/gui/dictionary/data/optional/UmlsAllTuis.txt A ctakes-gui-res/src/main/resources/org/apache/ctakes/gui/pipeline A ctakes-gui-res/src/main/resources/org/apache/ctakes/gui/pipeline/icon AU ctakes-gui-res/src/main/resources/org/apache/ctakes/gui/pipeline/icon/Package.png AU ctakes-gui-res/src/main/resources/org/apache/ctakes/gui/pipeline/icon/blueup.png AU ctakes-gui-res/src/main/resources/org/apache/ctakes/gui/pipeline/icon/Help_32.png AU ctakes-gui-res/src/main/resources/org/apache/ctakes/gui/pipeline/icon/SavePiper.png AU ctakes-gui-res/src/main/resources/org/apache/ctakes/gui/pipeline/icon/PlusMark.png AU ctakes-gui-res/src/main/resources/org/apache/ctakes/gui/pipeline/icon/BlueRightArrow.png AU ctakes-gui-res/src/main/resources/org/apache/ctakes/gui/pipeline/icon/OpenPiper.png AU ctakes-gui-res/src/main/resources/org/apache/ctakes/gui/pipeline/icon/CheckRun.png AU ctakes-gui-res/src/main/resources/org/apache/ctakes/gui/pipeline/icon/GreenArrowIn.png AU ctakes-gui-res/src/main/resources/org/apache/ctakes/gui/pipeline/icon/Help_48.png AU ctakes-gui-res/src/main/resources/org/apache/ctakes/gui/pipeline/icon/Parameters.png AU ctakes-gui-res/src/main/resources/org/apache/ctakes/gui/pipeline/icon/RunPiper.png AU ctakes-gui-res/src/main/resources/org/apache/ctakes/gui/pipeline/icon/FindOnPc_48.png AU ctakes-gui-res/src/main/resources/org/apache/ctakes/gui/pipeline/icon/Utilities.png AU ctakes-gui-res/src/main/resources/org/apache/ctakes/gui/pipeline/icon/PiperFile.png AU ctakes-gui-res/src/main/resources/org/apache/ctakes/gui/pipeline/icon/bluedown.png AU ctakes-gui-res/src/main/resources/org/apache/ctakes/gui/pipeline/icon/BlueGearYellowGear.png AU ctakes-gui-res/src/main/resources/org/apache/ctakes/gui/pipeline/icon/Folder_Blue.png AU ctakes-gui-res/src/main/resources/org/apache/ctakes/gui/pipeline/icon/BoxOfStuff.png AU ctakes-gui-res/src/main/resources/org/apache/ctakes/gui/pipeline/icon/BlueGear.png AU ctakes-gui-res/src/main/resources/org/apache/ctakes/gui/pipeline/icon/redcircleno.png AU ctakes-gui-res/src/main/resources/org/apache/ctakes/gui/pipeline/icon/RunReady.png AU ctakes-gui-res/src/main/resources/org/apache/ctakes/gui/pipeline/icon/NewPiper.png AU ctakes-gui-res/src/main/resources/org/apache/ctakes/gui/pipeline/icon/Write.png AU ctakes-gui-res/src/main/resources/org/apache/ctakes/gui/pipeline/icon/BlueArrowOut.png A ctakes-gui-res/pom.xml U . At revision 1813319 Parsing POMs Downloaded artifact http://repo.maven.apache.org/maven2/org/cleartk/cleartk/2.0.0/cleartk-2.0.0.pom Established TCP socket on 43989 maven35-agent.jar already up to date maven35-interceptor.jar already up to date maven3-interceptor-commons.jar already up to date [ctakes-trunk-Java-1.9] $ /home/jenkins/tools/java/latest1.9/bin/java -Xmx4g -Xms256m -Dmaven.test.failure.ignore=false -cp /home/jenkins/jenkins-slave/maven35-agent.jar:/home/jenkins/tools/maven/apache-maven-3.5.0/boot/plexus-classworlds-2.5.2.jar:/home/jenkins/tools/maven/apache-maven-3.5.0/conf/logging jenkins.maven3.agent.Maven35Main /home/jenkins/tools/maven/apache-maven-3.5.0 /home/jenkins/jenkins-slave/slave.jar /home/jenkins/jenkins-slave/maven35-interceptor.jar /home/jenkins/jenkins-slave/maven3-interceptor-commons.jar 43989 ERROR: Failed to parse POMs java.io.IOException: Cannot run program "/home/jenkins/tools/java/latest1.9/bin/java" (in directory "<https://builds.apache.org/job/ctakes-trunk-Java-1.9/ws/";)>: error=2, No such file or directory at java.lang.ProcessBuilder.start(ProcessBuilder.java:1048) at hudson.Proc$LocalProc.<init>(Proc.java:249) at hudson.Proc$LocalProc.<init>(Proc.java:218) at hudson.Launcher$LocalLauncher.launch(Launcher.java:930) at hudson.Launcher$ProcStarter.start(Launcher.java:450) at hudson.Launcher$RemoteLaunchCallable.call(Launcher.java:1299) at hudson.Launcher$RemoteLaunchCallable.call(Launcher.java:1260) at hudson.remoting.UserRequest.perform(UserRequest.java:181) at hudson.remoting.UserRequest.perform(UserRequest.java:52) at hudson.remoting.Request$2.run(Request.java:336) at hudson.remoting.InterceptingExecutorService$1.call(InterceptingExecutorService.java:68) at java.util.concurrent.FutureTask.run(FutureTask.java:266) at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617) at java.lang.Thread.run(Thread.java:748) at ......remote call to H26(Native Method) at hudson.remoting.Channel.attachCallSiteStackTrace(Channel.java:1554) at hudson.remoting.UserResponse.retrieve(UserRequest.java:281) at hudson.remoting.Channel.call(Channel.java:839) at hudson.Launcher$RemoteLauncher.launch(Launcher.java:1053) at hudson.Launcher$ProcStarter.start(Launcher.java:450) at hudson.maven.AbstractMavenProcessFactory.newProcess(AbstractMavenProcessFactory.java:278) at hudson.maven.ProcessCache.get(ProcessCache.java:236) at hudson.maven.MavenModuleSetBuild$MavenModuleSetBuildExecution.doRun(MavenModuleSetBuild.java:804) at hudson.model.AbstractBuild$AbstractBuildExecution.run(AbstractBuild.java:496) at hudson.model.Run.execute(Run.java:1737) at hudson.maven.MavenModuleSetBuild.run(MavenModuleSetBuild.java:543) at hudson.model.ResourceController.execute(ResourceController.java:97) at hudson.model.Executor.run(Executor.java:419) Caused by: java.io.IOException: error=2, No such file or directory at java.lang.UNIXProcess.forkAndExec(Native Method) at java.lang.UNIXProcess.<init>(UNIXProcess.java:247) at java.lang.ProcessImpl.start(ProcessImpl.java:134) at java.lang.ProcessBuilder.start(ProcessBuilder.java:1029) at hudson.Proc$LocalProc.<init>(Proc.java:249) at hudson.Proc$LocalProc.<init>(Proc.java:218) at hudson.Launcher$LocalLauncher.launch(Launcher.java:930) at hudson.Launcher$ProcStarter.start(Launcher.java:450) at hudson.Launcher$RemoteLaunchCallable.call(Launcher.java:1299) at hudson.Launcher$RemoteLaunchCallable.call(Launcher.java:1260) at hudson.remoting.UserRequest.perform(UserRequest.java:181) at hudson.remoting.UserRequest.perform(UserRequest.java:52) at hudson.remoting.Request$2.run(Request.java:336) at hudson.remoting.InterceptingExecutorService$1.call(InterceptingExecutorService.java:68) at java.util.concurrent.FutureTask.run(FutureTask.java:266) at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617) at java.lang.Thread.run(Thread.java:748)
