See <https://builds.apache.org/job/ctakes-trunk-Java-1.9/19/display/redirect?page=changes>
Changes: [tmill] WIP: Fixes compiler error but coref eval still not working. ------------------------------------------ [...truncated 320.84 KB...] A ctakes-relation-extractor/src/main/java/org/apache/ctakes/relationextractor/knowtator/ArgumentInfo.java A ctakes-relation-extractor/src/main/java/org/apache/ctakes/relationextractor/knowtator/Span.java A ctakes-relation-extractor/src/main/java/org/apache/ctakes/relationextractor/pipelines A ctakes-relation-extractor/src/main/java/org/apache/ctakes/relationextractor/pipelines/RelationExtractorConsumer.java A ctakes-relation-extractor/src/main/java/org/apache/ctakes/relationextractor/pipelines/RelationExtractorTrain.java AU ctakes-relation-extractor/src/main/java/org/apache/ctakes/relationextractor/pipelines/TreeFeatureConsumer.java A ctakes-relation-extractor/src/main/java/org/apache/ctakes/relationextractor/pipelines/RelationExtractorPipelineSingleCas.java A ctakes-relation-extractor/src/main/java/org/apache/ctakes/relationextractor/pipelines/RelationAnnotationViewer.java A ctakes-relation-extractor/src/main/java/org/apache/ctakes/relationextractor/pipelines/SelectiveRelationAnnotationViewer.java A ctakes-relation-extractor/src/main/java/org/apache/ctakes/relationextractor/pipelines/RelationExtractorPipeline.java A ctakes-relation-extractor/src/main/java/org/apache/ctakes/relationextractor/data A ctakes-relation-extractor/src/main/java/org/apache/ctakes/relationextractor/data/Splitter.java A ctakes-relation-extractor/src/main/java/org/apache/ctakes/relationextractor/data/GoldAnnotationStatsCalculator.java A ctakes-relation-extractor/src/main/java/org/apache/ctakes/relationextractor/data/GoldAnnotationAnalysisPipeline.java A ctakes-relation-extractor/src/main/java/org/apache/ctakes/relationextractor/data/Constants.java A ctakes-relation-extractor/src/main/java/org/apache/ctakes/relationextractor/data/CategoricalDistribution.java A ctakes-relation-extractor/src/main/java/org/apache/ctakes/relationextractor/data/Stats.java A ctakes-relation-extractor/src/main/java/org/apache/ctakes/relationextractor/data/analysis AU ctakes-relation-extractor/src/main/java/org/apache/ctakes/relationextractor/data/analysis/Utils.java AU ctakes-relation-extractor/src/main/java/org/apache/ctakes/relationextractor/data/analysis/EventAndEntityViewer.java AU ctakes-relation-extractor/src/main/java/org/apache/ctakes/relationextractor/data/analysis/GoldRelationViewer.java A ctakes-relation-extractor/src/main/java/org/apache/ctakes/relationextractor/metastasis AU ctakes-relation-extractor/src/main/java/org/apache/ctakes/relationextractor/metastasis/MetastasisAnaforaXMLReader.java AU ctakes-relation-extractor/src/main/java/org/apache/ctakes/relationextractor/metastasis/AnatomicalSiteListExtractorPipeline.java AU ctakes-relation-extractor/src/main/java/org/apache/ctakes/relationextractor/metastasis/MetastasisXmiGenerationPipeline.java A ctakes-relation-extractor/docs A ctakes-relation-extractor/docs/todo.txt A ctakes-relation-extractor/docs/knowtator.txt A ctakes-relation-extractor/docs/readme.txt A ctakes-relation-extractor/pom.xml A ctakes-relation-extractor/resources A ctakes-relation-extractor/resources/launch AU ctakes-relation-extractor/resources/launch/UIMA_CPE--relation-extractor.launch AU ctakes-relation-extractor/resources/launch/UIMA_CVD--relation-extractor.launch A ctakes-relation-extractor/desc A ctakes-relation-extractor/desc/analysis_engine A ctakes-relation-extractor/desc/analysis_engine/LocationOfRelationExtractorAnnotator.xml A ctakes-relation-extractor/desc/analysis_engine/DegreeOfRelationExtractorAnnotator.xml A ctakes-relation-extractor/desc/analysis_engine/ModifierExtractorAnnotator.xml AU ctakes-relation-extractor/desc/analysis_engine/RelationExtractorAggregate.xml AU ctakes-relation-extractor/desc/analysis_engine/RelationExtractorPreprocessor.xml A ctakes-relation-extractor/desc/analysis_engine/RemoteDictionary.xml A ctakes-relation-extractor/metadata A ctakes-relation-extractor/metadata/install.xml A ctakes-preprocessor A ctakes-preprocessor/LICENSE A ctakes-preprocessor/src A ctakes-preprocessor/src/test A ctakes-preprocessor/src/test/data A ctakes-preprocessor/src/test/data/output A ctakes-preprocessor/src/test/data/output/testpatient_cn_1.xml.included.xml A ctakes-preprocessor/src/test/resources A ctakes-preprocessor/src/test/resources/testpatient_cn_1.xml A ctakes-preprocessor/src/test/resources/NotesIIST_RTF.DTD A ctakes-preprocessor/src/test/java A ctakes-preprocessor/src/test/java/org A ctakes-preprocessor/src/test/java/org/apache A ctakes-preprocessor/src/test/java/org/apache/ctakes A ctakes-preprocessor/src/test/java/org/apache/ctakes/preprocessor A ctakes-preprocessor/src/test/java/org/apache/ctakes/preprocessor/ClinicalNotePreProcessorTest.java A ctakes-preprocessor/src/main A ctakes-preprocessor/src/main/resources A ctakes-preprocessor/src/main/resources/org A ctakes-preprocessor/src/main/resources/org/apache A ctakes-preprocessor/src/main/resources/org/apache/ctakes A ctakes-preprocessor/src/main/resources/org/apache/ctakes/preprocessor A ctakes-preprocessor/src/main/resources/org/apache/ctakes/preprocessor/cda A ctakes-preprocessor/src/main/resources/org/apache/ctakes/preprocessor/cda/NotesIIST_RTF.DTD A ctakes-preprocessor/src/main/resources/org/apache/ctakes/preprocessor/tokenizer A ctakes-preprocessor/src/main/resources/org/apache/ctakes/preprocessor/tokenizer/hyphenated.txt A ctakes-preprocessor/src/main/resources/org/apache/ctakes/preprocessor/tokenizer/hyphenated_sample.txt A ctakes-preprocessor/src/main/resources/org/apache/ctakes/preprocessor/tokenizer/hyphenated.README.mayo A ctakes-preprocessor/src/main/java A ctakes-preprocessor/src/main/java/org A ctakes-preprocessor/src/main/java/org/apache A ctakes-preprocessor/src/main/java/org/apache/ctakes A ctakes-preprocessor/src/main/java/org/apache/ctakes/preprocessor A ctakes-preprocessor/src/main/java/org/apache/ctakes/preprocessor/DocumentMetaData.java A ctakes-preprocessor/src/main/java/org/apache/ctakes/preprocessor/test A ctakes-preprocessor/src/main/java/org/apache/ctakes/preprocessor/test/TestDriver.java A ctakes-preprocessor/src/main/java/org/apache/ctakes/preprocessor/DTDloader.java A ctakes-preprocessor/src/main/java/org/apache/ctakes/preprocessor/SegmentMetaData.java A ctakes-preprocessor/src/main/java/org/apache/ctakes/preprocessor/Utility.java A ctakes-preprocessor/src/main/java/org/apache/ctakes/preprocessor/ae A ctakes-preprocessor/src/main/java/org/apache/ctakes/preprocessor/ae/CdaCasInitializer.java A ctakes-preprocessor/src/main/java/org/apache/ctakes/preprocessor/PreProcessor.java A ctakes-preprocessor/src/main/java/org/apache/ctakes/preprocessor/Annotation.java A ctakes-preprocessor/src/main/java/org/apache/ctakes/preprocessor/IntegerRange.java A ctakes-preprocessor/src/main/java/org/apache/ctakes/preprocessor/ClinicalNotePreProcessor.java A ctakes-preprocessor/src/main/java/edu A ctakes-preprocessor/src/main/java/edu/mayo A ctakes-preprocessor/src/main/java/edu/mayo/bmi A ctakes-preprocessor/src/main/java/edu/mayo/bmi/uima A ctakes-preprocessor/pom.xml A ctakes-preprocessor/resources A ctakes-preprocessor/resources/launch AU ctakes-preprocessor/resources/launch/document_preprocessor.launch AU ctakes-preprocessor/resources/launch/UIMA_CPE_GUI--document_preprocessor.launch A ctakes-preprocessor/README A ctakes-preprocessor/desc A ctakes-preprocessor/desc/CPE_CdaCasInitializer.xml A ctakes-preprocessor/desc/AggregateAE.xml A ctakes-preprocessor/desc/CdaCasInitializer.xml A ctakes-smoking-status A ctakes-smoking-status/metadata AU ctakes-smoking-status/metadata/PEAR.properties AU ctakes-smoking-status/metadata/setenv.txt AU ctakes-smoking-status/metadata/install.xml AU ctakes-smoking-status/LICENSE A ctakes-smoking-status/src A ctakes-smoking-status/src/main A ctakes-smoking-status/src/main/java A ctakes-smoking-status/src/main/java/org A ctakes-smoking-status/src/main/java/org/apache A ctakes-smoking-status/src/main/java/org/apache/ctakes A ctakes-smoking-status/src/main/java/org/apache/ctakes/smokingstatus A ctakes-smoking-status/src/main/java/org/apache/ctakes/smokingstatus/patientLevel AU ctakes-smoking-status/src/main/java/org/apache/ctakes/smokingstatus/patientLevel/PatientLevelSmokingStatus.java A ctakes-smoking-status/src/main/java/org/apache/ctakes/smokingstatus/util AU ctakes-smoking-status/src/main/java/org/apache/ctakes/smokingstatus/util/ClassifiableEntry.java AU ctakes-smoking-status/src/main/java/org/apache/ctakes/smokingstatus/util/TruthValue.java A ctakes-smoking-status/src/main/java/org/apache/ctakes/smokingstatus/i2b2 A ctakes-smoking-status/src/main/java/org/apache/ctakes/smokingstatus/context A ctakes-smoking-status/src/main/java/org/apache/ctakes/smokingstatus/context/negation AU ctakes-smoking-status/src/main/java/org/apache/ctakes/smokingstatus/context/negation/NegationContextAnalyzer.java AU ctakes-smoking-status/src/main/java/org/apache/ctakes/smokingstatus/context/NamedEntityContextAnalyzer.java A ctakes-smoking-status/src/main/java/org/apache/ctakes/smokingstatus/machine AU ctakes-smoking-status/src/main/java/org/apache/ctakes/smokingstatus/machine/NegationFSM.java A ctakes-smoking-status/src/main/java/org/apache/ctakes/smokingstatus/ae AU ctakes-smoking-status/src/main/java/org/apache/ctakes/smokingstatus/ae/SentenceAdjuster.java AU ctakes-smoking-status/src/main/java/org/apache/ctakes/smokingstatus/ae/ResolutionAnnotator.java AU ctakes-smoking-status/src/main/java/org/apache/ctakes/smokingstatus/ae/ClassifiableEntries.java AU ctakes-smoking-status/src/main/java/org/apache/ctakes/smokingstatus/ae/PcsClassifierAnnotator_libsvm.java AU ctakes-smoking-status/src/main/java/org/apache/ctakes/smokingstatus/ae/KuRuleBasedClassifierAnnotator.java A ctakes-smoking-status/src/main/java/org/apache/ctakes/smokingstatus/cc AU ctakes-smoking-status/src/main/java/org/apache/ctakes/smokingstatus/cc/RecordResolutionCasConsumer.java AU ctakes-smoking-status/src/main/java/org/apache/ctakes/smokingstatus/Const.java A ctakes-smoking-status/src/main/java/org/apache/ctakes/smokingstatus/MLutil AU ctakes-smoking-status/src/main/java/org/apache/ctakes/smokingstatus/MLutil/GenerateTrainingData.java A ctakes-smoking-status/src/main/java/org/apache/ctakes/smokingstatus/lookup A ctakes-smoking-status/src/main/java/org/apache/ctakes/smokingstatus/lookup/ae AU ctakes-smoking-status/src/main/java/org/apache/ctakes/smokingstatus/lookup/ae/NonSmokerNamedEntityLookupConsumerImpl.java AU ctakes-smoking-status/src/main/java/org/apache/ctakes/smokingstatus/lookup/ae/SmokerNamedEntityLookupConsumerImpl.java AU ctakes-smoking-status/src/main/java/org/apache/ctakes/smokingstatus/lookup/ae/UnknownSmokerNamedEntityLookupConsumerImpl.java A ctakes-smoking-status/src/main/resources A ctakes-smoking-status/src/main/resources/org A ctakes-smoking-status/src/main/resources/org/apache A ctakes-smoking-status/src/main/resources/org/apache/ctakes A ctakes-smoking-status/src/main/resources/org/apache/ctakes/smokingstatus A ctakes-smoking-status/src/main/resources/org/apache/ctakes/smokingstatus/types A ctakes-smoking-status/src/main/resources/org/apache/ctakes/smokingstatus/types/TypeSystem.xml A ctakes-smoking-status/data A ctakes-smoking-status/data/test AU ctakes-smoking-status/data/test/doc1_07543210_sample_current.txt AU ctakes-smoking-status/data/test/doc2_07543210_sample_current.txt A ctakes-smoking-status/data/test/output AU ctakes-smoking-status/data/test/output/record_resolution.txt AU ctakes-smoking-status/data/test/doc1_07543210_sample_past_smoker.txt AU ctakes-smoking-status/data/test/doc2_07543210_sample_past_smoker.txt A ctakes-smoking-status/data/test/cda A ctakes-smoking-status/data/test/cda/testpatient_cn_1.xml AU ctakes-smoking-status/data/test/doc1_07543210_sample_unknown.txt A ctakes-smoking-status/launch AU ctakes-smoking-status/launch/UIMA_CPE_GUI--Smokin_Status.launch AU ctakes-smoking-status/launch/UIMA CPE GUI (SmokingStatus).launch AU ctakes-smoking-status/launch/UIMA CAS Visual Debugger (Smoking Status).launch A ctakes-smoking-status/pom.xml AU ctakes-smoking-status/README A ctakes-smoking-status/desc A ctakes-smoking-status/desc/collection_processing_engine AU ctakes-smoking-status/desc/collection_processing_engine/Sample_SmokingStatus_output_flatfile.xml AU ctakes-smoking-status/desc/collection_processing_engine/Sample_SmokingStatus_output_cda.xml A ctakes-smoking-status/desc/cas_consumer AU ctakes-smoking-status/desc/cas_consumer/RecordResolutionCasConsumer.xml A ctakes-smoking-status/desc/analysis_engine AU ctakes-smoking-status/desc/analysis_engine/PcsClassifierAnnotator_libsvm.xml AU ctakes-smoking-status/desc/analysis_engine/ExternalBaseAggregateTAE.xml AU ctakes-smoking-status/desc/analysis_engine/SimulatedProdSmokingTAE.xml AU ctakes-smoking-status/desc/analysis_engine/ClassifiableEntriesAnnotator.xml AU ctakes-smoking-status/desc/analysis_engine/KuRuleBasedClassifierAnnotator.xml AU ctakes-smoking-status/desc/analysis_engine/NonsmokerDictionaryLookupAnnotator.xml AU ctakes-smoking-status/desc/analysis_engine/ProductionPostSentenceAggregate_step2_libsvm.xml AU ctakes-smoking-status/desc/analysis_engine/SmokingStatusDictionaryLookupAnnotator.xml AU ctakes-smoking-status/desc/analysis_engine/ArtificialSentenceAnnotator.xml AU ctakes-smoking-status/desc/analysis_engine/ProductionPostSentenceAggregate_step1.xml AU ctakes-smoking-status/desc/analysis_engine/Sentence.xml AU ctakes-smoking-status/desc/analysis_engine/ExternalBaseAggregateTAE_CDA.xml AU ctakes-smoking-status/desc/analysis_engine/SimulatedProdSmokingTAE_CDA.xml AU ctakes-smoking-status/desc/analysis_engine/SentenceAdjuster.xml AU ctakes-smoking-status/desc/analysis_engine/ResolutionAnnotator.xml U . At revision 1814764 Parsing POMs Established TCP socket on 46348 maven35-agent.jar already up to date maven35-interceptor.jar already up to date maven3-interceptor-commons.jar already up to date [ctakes-trunk-Java-1.9] $ /home/jenkins/tools/java/latest1.9/bin/java -Xmx4g -Xms256m -Dmaven.test.failure.ignore=false -cp /home/jenkins/jenkins-slave/maven35-agent.jar:/home/jenkins/tools/maven/apache-maven-3.5.0/boot/plexus-classworlds-2.5.2.jar:/home/jenkins/tools/maven/apache-maven-3.5.0/conf/logging jenkins.maven3.agent.Maven35Main /home/jenkins/tools/maven/apache-maven-3.5.0 /home/jenkins/jenkins-slave/slave.jar /home/jenkins/jenkins-slave/maven35-interceptor.jar /home/jenkins/jenkins-slave/maven3-interceptor-commons.jar 46348 ERROR: Failed to parse POMs java.io.IOException: Cannot run program "/home/jenkins/tools/java/latest1.9/bin/java" (in directory "<https://builds.apache.org/job/ctakes-trunk-Java-1.9/ws/";)>: error=2, No such file or directory at java.lang.ProcessBuilder.start(ProcessBuilder.java:1048) at hudson.Proc$LocalProc.<init>(Proc.java:249) at hudson.Proc$LocalProc.<init>(Proc.java:218) at hudson.Launcher$LocalLauncher.launch(Launcher.java:930) at hudson.Launcher$ProcStarter.start(Launcher.java:450) at hudson.Launcher$RemoteLaunchCallable.call(Launcher.java:1299) at hudson.Launcher$RemoteLaunchCallable.call(Launcher.java:1260) at hudson.remoting.UserRequest.perform(UserRequest.java:181) at hudson.remoting.UserRequest.perform(UserRequest.java:52) at hudson.remoting.Request$2.run(Request.java:336) at hudson.remoting.InterceptingExecutorService$1.call(InterceptingExecutorService.java:68) at java.util.concurrent.FutureTask.run(FutureTask.java:266) at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617) at java.lang.Thread.run(Thread.java:748) at ......remote call to ubuntu-eu3(Native Method) at hudson.remoting.Channel.attachCallSiteStackTrace(Channel.java:1554) at hudson.remoting.UserResponse.retrieve(UserRequest.java:281) at hudson.remoting.Channel.call(Channel.java:839) at hudson.Launcher$RemoteLauncher.launch(Launcher.java:1053) at hudson.Launcher$ProcStarter.start(Launcher.java:450) at hudson.maven.AbstractMavenProcessFactory.newProcess(AbstractMavenProcessFactory.java:278) at hudson.maven.ProcessCache.get(ProcessCache.java:236) at hudson.maven.MavenModuleSetBuild$MavenModuleSetBuildExecution.doRun(MavenModuleSetBuild.java:804) at hudson.model.AbstractBuild$AbstractBuildExecution.run(AbstractBuild.java:496) at hudson.model.Run.execute(Run.java:1737) at hudson.maven.MavenModuleSetBuild.run(MavenModuleSetBuild.java:543) at hudson.model.ResourceController.execute(ResourceController.java:97) at hudson.model.Executor.run(Executor.java:419) Caused by: java.io.IOException: error=2, No such file or directory at java.lang.UNIXProcess.forkAndExec(Native Method) at java.lang.UNIXProcess.<init>(UNIXProcess.java:247) at java.lang.ProcessImpl.start(ProcessImpl.java:134) at java.lang.ProcessBuilder.start(ProcessBuilder.java:1029) at hudson.Proc$LocalProc.<init>(Proc.java:249) at hudson.Proc$LocalProc.<init>(Proc.java:218) at hudson.Launcher$LocalLauncher.launch(Launcher.java:930) at hudson.Launcher$ProcStarter.start(Launcher.java:450) at hudson.Launcher$RemoteLaunchCallable.call(Launcher.java:1299) at hudson.Launcher$RemoteLaunchCallable.call(Launcher.java:1260) at hudson.remoting.UserRequest.perform(UserRequest.java:181) at hudson.remoting.UserRequest.perform(UserRequest.java:52) at hudson.remoting.Request$2.run(Request.java:336) at hudson.remoting.InterceptingExecutorService$1.call(InterceptingExecutorService.java:68) at java.util.concurrent.FutureTask.run(FutureTask.java:266) at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617) at java.lang.Thread.run(Thread.java:748)
