See <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/30/display/redirect?page=changes>
Changes: [alexz] CTAKES-479: skip testCPE when UMLS credentials not exported as env vars ------------------------------------------ [...truncated 864.93 KB...] [INFO] Working dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/target/sonar> [INFO] Source encoding: UTF-8, default locale: en_US [INFO] Sensor Lines Sensor [INFO] Sensor Lines Sensor (done) | time=1ms [INFO] Sensor SCM Sensor [INFO] Sensor SCM Sensor (done) | time=0ms [INFO] Sensor Coverage Report Import [INFO] Sensor Coverage Report Import (done) | time=0ms [INFO] Sensor Coverage Report Import [INFO] Sensor Coverage Report Import (done) | time=0ms [INFO] Sensor Unit Test Results Import [INFO] Sensor Unit Test Results Import (done) | time=0ms [INFO] Sensor XmlFileSensor [INFO] Sensor XmlFileSensor (done) | time=0ms [INFO] Sensor Zero Coverage Sensor [INFO] Sensor Zero Coverage Sensor (done) | time=0ms [INFO] Sensor Code Colorizer Sensor [INFO] Sensor Code Colorizer Sensor (done) | time=0ms [INFO] Sensor CPD Block Indexer [INFO] Sensor CPD Block Indexer (done) | time=0ms [INFO] Calculating CPD for 1098 files [INFO] CPD calculation finished [INFO] Analysis report generated in 1609ms, dir size=18 MB [INFO] Analysis reports compressed in 2871ms, zip size=7 MB [INFO] Analysis report uploaded in 2185ms [INFO] ANALYSIS SUCCESSFUL, you can browse https://builds.apache.org/analysis/dashboard/index/org.apache.ctakes:ctakes [INFO] Note that you will be able to access the updated dashboard once the server has processed the submitted analysis report [INFO] More about the report processing at https://builds.apache.org/analysis/api/ce/task?id=AV_G_ACxmqiS_xQKKaVN [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [INFO] ------------------------------------------------------------------------ [INFO] Reactor Summary: [INFO] [INFO] Apache cTAKES ...................................... SUCCESS [04:47 min] [INFO] ctakes-gui-res ..................................... SUCCESS [ 4.064 s] [INFO] Apache cTAKES Resources core ....................... SUCCESS [ 2.655 s] [INFO] Apache cTAKES common type system ................... SUCCESS [ 7.764 s] [INFO] Apache cTAKES utils ................................ SUCCESS [ 3.901 s] [INFO] Apache cTAKES core ................................. SUCCESS [ 25.973 s] [INFO] ctakes-gui ......................................... SUCCESS [ 5.606 s] [INFO] Apache cTAKES Resources pos-tagger ................. SUCCESS [ 3.632 s] [INFO] Apache cTAKES part-of-speech tagger ................ SUCCESS [ 5.203 s] [INFO] Apache cTAKES Resources ctakes-chunker-res ......... SUCCESS [ 3.293 s] [INFO] Apache cTAKES chunker .............................. SUCCESS [ 3.581 s] [INFO] Apache cTAKES document preprocessor ................ SUCCESS [ 3.756 s] [INFO] Apache cTAKES Resources dictionary-lookup .......... SUCCESS [ 10.346 s] [INFO] Apache cTAKES dictionary lookup .................... FAILURE [ 3.203 s] [INFO] Apache cTAKES context dependent tokenizer .......... SUCCESS [ 4.597 s] [INFO] Apache cTAKES Resources lvg ........................ SUCCESS [ 28.714 s] [INFO] Apache cTAKES LVG lexical tools .................... SUCCESS [ 5.556 s] [INFO] Apache cTAKES Resources ne-contexts ................ SUCCESS [ 2.502 s] [INFO] Apache cTAKES named entity contexts ................ SUCCESS [ 5.736 s] [INFO] Apache cTAKES Resources constituency-parser ........ SUCCESS [ 5.883 s] [INFO] Apache cTAKES Constituency Parser .................. SUCCESS [ 3.840 s] [INFO] Apache cTAKES Resources coreference ................ SUCCESS [ 8.779 s] [INFO] Apache cTAKES Resources temporal ................... SUCCESS [ 2.961 s] [INFO] Apache cTAKES Resources relation-extractor ......... SUCCESS [ 2.479 s] [INFO] Apache cTAKES Resources dictionary-lookup-fast-res . SUCCESS [ 3.096 s] [INFO] Apache cTAKES dictionary lookup fast ............... FAILURE [ 1.773 s] [INFO] Apache cTAKES Resources assertion .................. SUCCESS [ 3.855 s] [INFO] Apache cTAKES Resources dependency-parser .......... SUCCESS [ 24.067 s] [INFO] Apache cTAKES Dependency Parser .................... SUCCESS [ 51.913 s] [INFO] Apache cTAKES Assertion ............................ SUCCESS [ 8.989 s] [INFO] ctakes-clinical-pipeline-res ....................... SUCCESS [ 2.695 s] [INFO] Apache cTAKES ctakes-clinical-pipeline ............. SKIPPED [INFO] Apache cTAKES Relation Extractor ................... SKIPPED [INFO] Apache cTAKES Temporal Information Extraction ...... SKIPPED [INFO] Apache cTAKES CoReference Resolver ................. SKIPPED [INFO] Apache cTAKES Resources drug-ner ................... SUCCESS [ 2.814 s] [INFO] Apache cTAKES Drug NER ............................. SKIPPED [INFO] Apache cTAKES Resources side-effect ................ SUCCESS [ 2.720 s] [INFO] Apache cTAKES Side Effects ......................... SKIPPED [INFO] Apache cTAKES Resources smoking-status ............. SUCCESS [ 3.119 s] [INFO] Apache cTAKES Smoking Status ....................... SKIPPED [INFO] Apache cTAKES Resources assertion-zoner ............ SUCCESS [ 2.541 s] [INFO] Apache cTAKES Assertion's zoner .................... SUCCESS [ 3.064 s] [INFO] ctakes-examples-res ................................ SUCCESS [ 2.505 s] [INFO] ctakes-examples .................................... SKIPPED [INFO] Apache cTAKES Resources ctakes-ytex-res ............ SUCCESS [ 2.362 s] [INFO] Apache cTAKES YTEX ................................. SKIPPED [INFO] Apache cTAKES YTEX UIMA ............................ SKIPPED [INFO] Apache cTAKES YTEX Web ............................. SKIPPED [INFO] Apache cTAKES Distribution ......................... SKIPPED [INFO] Apache cTAKES Regression-test ...................... SKIPPED [INFO] Apache cTAKES template filler ...................... SKIPPED [INFO] ------------------------------------------------------------------------ [INFO] BUILD FAILURE [INFO] ------------------------------------------------------------------------ [INFO] Total time: 11:06 min [INFO] Finished at: 2017-11-16T22:39:20Z [INFO] Final Memory: 119M/1625M [INFO] ------------------------------------------------------------------------ [ERROR] Failed to execute goal org.apache.maven.plugins:maven-compiler-plugin:2.4:compile (default-compile) on project ctakes-dictionary-lookup: Compilation failure: Compilation failure: [ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/UmlsDictionaryLookupAnnotator.java>:[22,32] error: cannot find symbol [ERROR] symbol: class UmlsEnvironmentConfiguration [ERROR] location: package org.apache.ctakes.core.ae [ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/ThreadedUmlsDictionaryLookupAnnotator.java>:[21,32] error: cannot find symbol [ERROR] symbol: class UmlsEnvironmentConfiguration [ERROR] location: package org.apache.ctakes.core.ae [ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/AssertionCuePhraseConsumerImpl.java>:[96,45] [unchecked] unchecked method invocation: method organizeByOffset in class BaseLookupConsumerImpl is applied to given types [ERROR] required: Iterator<LookupHit> [ERROR] found: Iterator [ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/AssertionCuePhraseConsumerImpl.java>:[96,46] [unchecked] unchecked conversion [ERROR] required: Iterator<LookupHit> [ERROR] found: Iterator [ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/algorithms/FirstTokenPermutationImpl.java>:[213,44] [unchecked] unchecked conversion [ERROR] required: List<Integer> [ERROR] found: List [ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/UmlsToSnomedLuceneConsumerImpl.java>:[94,34] [deprecation] open(Directory) in IndexReader has been deprecated [ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/LookupParseUtilitiesRefactor.java>:[87,72] [unchecked] unchecked conversion [ERROR] required: List<Element> [ERROR] found: List [ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/LookupParseUtilitiesRefactor.java>:[161,95] [unchecked] unchecked conversion [ERROR] required: List<Element> [ERROR] found: List [ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/LookupParseUtilitiesRefactor.java>:[174,23] [unchecked] unchecked method invocation: method addExcludeList in class LookupParseUtilitiesRefactor is applied to given types [ERROR] required: DictionaryEngine,List<Element> [ERROR] found: DictionaryEngine,List [ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/LookupParseUtilitiesRefactor.java>:[174,60] [unchecked] unchecked conversion [ERROR] required: List<Element> [ERROR] found: List [ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/LookupParseUtilitiesRefactor.java>:[205,72] [unchecked] unchecked conversion [ERROR] required: List<Element> [ERROR] found: List [ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/LookupParseUtilitiesRefactor.java>:[302,64] [unchecked] unchecked conversion [ERROR] required: List<Element> [ERROR] found: List [ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/strtable/FieldConstraintImpl.java>:[60,41] [unchecked] unchecked call to compareTo(T) as a member of the raw type Comparable [ERROR] where T is a type-variable: [ERROR] T extends Object declared in interface Comparable [ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/UmlsDictionaryLookupAnnotator.java>:[75,75] error: package UmlsEnvironmentConfiguration does not exist [ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/UmlsDictionaryLookupAnnotator.java>:[76,78] error: package UmlsEnvironmentConfiguration does not exist [ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/UmlsDictionaryLookupAnnotator.java>:[77,76] error: package UmlsEnvironmentConfiguration does not exist [ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/UmlsDictionaryLookupAnnotator.java>:[78,74] error: package UmlsEnvironmentConfiguration does not exist [ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/UmlsDictionaryLookupAnnotator.java>:[80,36] error: cannot find symbol [ERROR] symbol: variable UmlsEnvironmentConfiguration [ERROR] location: class UmlsDictionaryLookupAnnotator [ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/UmlsDictionaryLookupAnnotator.java>:[133,13] error: cannot find symbol [ERROR] symbol: variable UmlsEnvironmentConfiguration [ERROR] location: class UmlsDictionaryLookupAnnotator [ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/UmlsDictionaryLookupAnnotator.java>:[135,13] error: cannot find symbol [ERROR] symbol: variable UmlsEnvironmentConfiguration [ERROR] location: class UmlsDictionaryLookupAnnotator [ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/ThreadedUmlsDictionaryLookupAnnotator.java>:[47,88] error: package UmlsEnvironmentConfiguration does not exist [ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/ThreadedUmlsDictionaryLookupAnnotator.java>:[48,88] error: package UmlsEnvironmentConfiguration does not exist [ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/ThreadedUmlsDictionaryLookupAnnotator.java>:[49,86] error: package UmlsEnvironmentConfiguration does not exist [ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/ThreadedUmlsDictionaryLookupAnnotator.java>:[50,90] error: package UmlsEnvironmentConfiguration does not exist [ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/ThreadedUmlsDictionaryLookupAnnotator.java>:[51,31] error: cannot find symbol [ERROR] symbol: variable UmlsEnvironmentConfiguration [ERROR] location: class ThreadedUmlsDictionaryLookupAnnotator [ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/assertion/CreateAssertionLuceneIndexFromDelimitedFile.java>:[266,15] [unchecked] unchecked call to put(K,V) as a member of the raw type Map [ERROR] where K,V are type-variables: [ERROR] K extends Object declared in interface Map [ERROR] V extends Object declared in interface Map [ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/assertion/CreateAssertionLuceneIndexFromDelimitedFile.java>:[389,19] [unchecked] unchecked method invocation: method sort in class Collections is applied to given types [ERROR] required: List<T>,Comparator<? super T> [ERROR] found: List,OffsetComparator [ERROR] where T is a type-variable: [ERROR] T extends Object declared in method <T>sort(List<T>,Comparator<? super T>) [ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/assertion/CreateAssertionLuceneIndexFromDelimitedFile.java>:[389,20] [unchecked] unchecked conversion [ERROR] -> [Help 1] [ERROR] Failed to execute goal org.apache.maven.plugins:maven-compiler-plugin:2.4:compile (default-compile) on project ctakes-dictionary-lookup-fast: Compilation failure: Compilation failure: [ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/src/main/java/org/apache/ctakes/dictionary/lookup2/util/UmlsUserApprover.java>:[21,32] error: cannot find symbol [ERROR] symbol: class UmlsEnvironmentConfiguration [ERROR] location: package org.apache.ctakes.core.ae [ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/src/main/java/org/apache/ctakes/dictionary/lookup2/util/UmlsUserApprover.java>:[187,77] error: cannot find symbol [ERROR] symbol: class UmlsEnvironmentConfiguration [ERROR] location: class UmlsUserApprover [ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/src/main/java/org/apache/ctakes/dictionary/lookup2/ae/AbstractJCasTermAnnotator.java>:[106,54] [unchecked] unchecked cast [ERROR] required: Class<? extends Annotation> [ERROR] found: Class<CAP#1> [ERROR] where CAP#1 is a fresh type-variable: [ERROR] CAP#1 extends Object from capture of ? [ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/src/main/java/org/apache/ctakes/dictionary/lookup2/util/UmlsUserApprover.java>:[78,79] error: package UmlsEnvironmentConfiguration does not exist [ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/src/main/java/org/apache/ctakes/dictionary/lookup2/util/UmlsUserApprover.java>:[82,78] error: package UmlsEnvironmentConfiguration does not exist [ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/src/main/java/org/apache/ctakes/dictionary/lookup2/util/UmlsUserApprover.java>:[86,76] error: package UmlsEnvironmentConfiguration does not exist [ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/src/main/java/org/apache/ctakes/dictionary/lookup2/util/UmlsUserApprover.java>:[93,76] error: package UmlsEnvironmentConfiguration does not exist [ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/src/main/java/org/apache/ctakes/dictionary/lookup2/util/UmlsUserApprover.java>:[193,59] error: cannot find symbol [ERROR] symbol: variable UmlsEnvironmentConfiguration [ERROR] location: class UmlsUserApprover [ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/src/main/java/org/apache/ctakes/dictionary/lookup2/util/UmlsUserApprover.java>:[197,59] error: cannot find symbol [ERROR] symbol: variable UmlsEnvironmentConfiguration [ERROR] location: class UmlsUserApprover [ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/src/main/java/org/apache/ctakes/dictionary/lookup2/ae/OverlapJCasTermAnnotator.java>:[223,12] [deprecation] DICTIONARY_DESCRIPTOR_KEY in JCasTermAnnotator has been deprecated [ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/src/main/java/org/apache/ctakes/dictionary/lookup2/ae/OverlapJCasTermAnnotator.java>:[231,12] [deprecation] DICTIONARY_DESCRIPTOR_KEY in JCasTermAnnotator has been deprecated [ERROR] -> [Help 1] [ERROR] [ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch. [ERROR] Re-run Maven using the -X switch to enable full debug logging. [ERROR] [ERROR] For more information about the errors and possible solutions, please read the following articles: [ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoFailureException [ERROR] [ERROR] After correcting the problems, you can resume the build with the command [ERROR] mvn <goals> -rf :ctakes-dictionary-lookup Sending e-mails to: [email protected] [email protected] Sending e-mails to: [email protected] [email protected] channel stopped
