See <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/37/display/redirect?page=changes>
Changes: [tmill] Fix to patient-aware coreference with new API. Compiles and evaluates correctly. ------------------------------------------ [...truncated 1.55 MB...] [INFO] ------------- Scan Apache cTAKES dictionary lookup fast [INFO] Base dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast> [INFO] Working dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/target/sonar> [INFO] Source paths: pom.xml, src/main/java [INFO] Test paths: src/test/java [INFO] Binary dirs: target/classes [INFO] Source encoding: UTF-8, default locale: en_US [INFO] Index files [INFO] 49 files indexed [INFO] Quality profile for java: Sonar way [INFO] Sensor Lines Sensor [INFO] Sensor Lines Sensor (done) | time=1ms [INFO] Sensor JavaSquidSensor [INFO] Configured Java source version (sonar.java.source): 8 [INFO] JavaClasspath initialization [INFO] JavaClasspath initialization (done) | time=1ms [INFO] JavaTestClasspath initialization [INFO] JavaTestClasspath initialization (done) | time=0ms [INFO] Java Main Files AST scan [INFO] 46 source files to be analyzed [WARNING] Class not found: jdk.nashorn.internal.ir.annotations.Immutable [WARNING] Class not found: jdk.nashorn.internal.ir.annotations.Immutable [INFO] Java Main Files AST scan (done) | time=4685ms [INFO] Java Test Files AST scan [INFO] 3 source files to be analyzed [INFO] 46/46 source files have been analyzed [WARNING] Class not found: jdk.nashorn.internal.ir.annotations.Immutable [INFO] Java Test Files AST scan (done) | time=26ms [INFO] Sensor JavaSquidSensor (done) | time=4722ms [INFO] Sensor SCM Sensor [INFO] 3/3 source files have been analyzed [INFO] Sensor SCM Sensor (done) | time=3ms [INFO] Sensor Coverage Report Import [INFO] Sensor Coverage Report Import (done) | time=0ms [INFO] Sensor Coverage Report Import [INFO] Sensor Coverage Report Import (done) | time=0ms [INFO] Sensor Unit Test Results Import [INFO] Sensor Unit Test Results Import (done) | time=0ms [INFO] Sensor SurefireSensor [INFO] parsing <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/target/surefire-reports> [INFO] Sensor SurefireSensor (done) | time=0ms [INFO] Sensor JaCoCoSensor [INFO] JaCoCoSensor: JaCoCo report not found : <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/target/jacoco.exec> [INFO] Sensor JaCoCoSensor (done) | time=0ms [INFO] Sensor JaCoCoItSensor [INFO] JaCoCoItSensor: JaCoCo IT report not found: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/target/jacoco-it.exec> [INFO] Sensor JaCoCoItSensor (done) | time=0ms [INFO] Sensor JaCoCoOverallSensor [INFO] Sensor JaCoCoOverallSensor (done) | time=0ms [INFO] Sensor XmlFileSensor [INFO] Sensor XmlFileSensor (done) | time=1ms [INFO] Sensor Zero Coverage Sensor [INFO] Sensor Zero Coverage Sensor (done) | time=4ms [INFO] Sensor Code Colorizer Sensor [INFO] Sensor Code Colorizer Sensor (done) | time=0ms [INFO] Sensor CPD Block Indexer [INFO] JavaCpdBlockIndexer is used for java [INFO] Sensor CPD Block Indexer (done) | time=35ms [INFO] ------------- Scan Apache cTAKES Resources dictionary-lookup-fast-res [INFO] Base dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast-res> [INFO] Working dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast-res/target/sonar> [INFO] Source paths: pom.xml [INFO] Binary dirs: target/classes [INFO] Source encoding: UTF-8, default locale: en_US [INFO] Index files [INFO] 0 files indexed [INFO] Sensor Lines Sensor [INFO] Sensor Lines Sensor (done) | time=0ms [INFO] Sensor SCM Sensor [INFO] Sensor SCM Sensor (done) | time=0ms [INFO] Sensor Coverage Report Import [INFO] Sensor Coverage Report Import (done) | time=0ms [INFO] Sensor Coverage Report Import [INFO] Sensor Coverage Report Import (done) | time=0ms [INFO] Sensor Unit Test Results Import [INFO] Sensor Unit Test Results Import (done) | time=0ms [INFO] Sensor XmlFileSensor [INFO] Sensor XmlFileSensor (done) | time=0ms [INFO] Sensor Zero Coverage Sensor [INFO] Sensor Zero Coverage Sensor (done) | time=0ms [INFO] Sensor Code Colorizer Sensor [INFO] Sensor Code Colorizer Sensor (done) | time=0ms [INFO] Sensor CPD Block Indexer [INFO] Sensor CPD Block Indexer (done) | time=0ms [INFO] ------------- Scan Apache cTAKES [INFO] Base dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/> [INFO] Working dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/target/sonar> [INFO] Source encoding: UTF-8, default locale: en_US [INFO] Sensor Lines Sensor [INFO] Sensor Lines Sensor (done) | time=0ms [INFO] Sensor SCM Sensor [INFO] Sensor SCM Sensor (done) | time=0ms [INFO] Sensor Coverage Report Import [INFO] Sensor Coverage Report Import (done) | time=1ms [INFO] Sensor Coverage Report Import [INFO] Sensor Coverage Report Import (done) | time=0ms [INFO] Sensor Unit Test Results Import [INFO] Sensor Unit Test Results Import (done) | time=0ms [INFO] Sensor XmlFileSensor [INFO] Sensor XmlFileSensor (done) | time=0ms [INFO] Sensor Zero Coverage Sensor [INFO] Sensor Zero Coverage Sensor (done) | time=0ms [INFO] Sensor Code Colorizer Sensor [INFO] Sensor Code Colorizer Sensor (done) | time=0ms [INFO] Sensor CPD Block Indexer [INFO] Sensor CPD Block Indexer (done) | time=0ms [INFO] Calculating CPD for 1099 files [INFO] CPD calculation finished [INFO] Analysis report generated in 1789ms, dir size=18 MB [INFO] Analysis reports compressed in 3835ms, zip size=7 MB [INFO] Analysis report uploaded in 2571ms [INFO] ANALYSIS SUCCESSFUL, you can browse https://builds.apache.org/analysis/dashboard/index/org.apache.ctakes:ctakes [INFO] Note that you will be able to access the updated dashboard once the server has processed the submitted analysis report [INFO] More about the report processing at https://builds.apache.org/analysis/api/ce/task?id=AV_LtiI5mqiS_xQKKaVk [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] 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SUCCESS [05:13 min] [INFO] ctakes-gui-res ..................................... SUCCESS [ 4.837 s] [INFO] Apache cTAKES Resources core ....................... SUCCESS [ 2.762 s] [INFO] Apache cTAKES common type system ................... SUCCESS [ 9.659 s] [INFO] Apache cTAKES utils ................................ SUCCESS [ 4.953 s] [INFO] Apache cTAKES core ................................. SUCCESS [ 25.558 s] [INFO] ctakes-gui ......................................... SUCCESS [ 4.812 s] [INFO] Apache cTAKES Resources pos-tagger ................. SUCCESS [ 3.382 s] [INFO] Apache cTAKES part-of-speech tagger ................ SUCCESS [ 5.999 s] [INFO] Apache cTAKES Resources ctakes-chunker-res ......... SUCCESS [ 3.525 s] [INFO] Apache cTAKES chunker .............................. SUCCESS [ 4.042 s] [INFO] Apache cTAKES document preprocessor ................ SUCCESS [ 4.098 s] [INFO] Apache cTAKES Resources dictionary-lookup .......... SUCCESS [ 48.318 s] [INFO] Apache cTAKES dictionary lookup .................... SUCCESS [ 26.431 s] [INFO] Apache cTAKES context dependent tokenizer .......... SUCCESS [ 53.254 s] [INFO] Apache cTAKES Resources lvg ........................ SUCCESS [01:30 min] [INFO] Apache cTAKES LVG lexical tools .................... SUCCESS [01:03 min] [INFO] Apache cTAKES Resources ne-contexts ................ SUCCESS [ 54.430 s] [INFO] Apache cTAKES named entity contexts ................ SUCCESS [01:09 min] [INFO] Apache cTAKES Resources constituency-parser ........ SUCCESS [01:27 min] [INFO] Apache cTAKES Constituency Parser .................. SUCCESS [01:09 min] [INFO] Apache cTAKES Resources coreference ................ SUCCESS [01:11 min] [INFO] Apache cTAKES Resources temporal ................... SUCCESS [ 47.567 s] [INFO] Apache cTAKES Resources relation-extractor ......... SUCCESS [01:08 min] [INFO] Apache cTAKES Resources dictionary-lookup-fast-res . SUCCESS [01:28 min] [INFO] Apache cTAKES dictionary lookup fast ............... SUCCESS [01:32 min] [INFO] Apache cTAKES Resources assertion .................. SUCCESS [ 52.649 s] [INFO] Apache cTAKES Resources dependency-parser .......... SUCCESS [01:10 min] [INFO] Apache cTAKES Dependency Parser .................... SUCCESS [01:42 min] [INFO] Apache cTAKES Assertion ............................ SUCCESS [ 18.834 s] [INFO] ctakes-clinical-pipeline-res ....................... SUCCESS [ 2.519 s] [INFO] Apache cTAKES ctakes-clinical-pipeline ............. SUCCESS [ 6.729 s] [INFO] Apache cTAKES Relation Extractor ................... SUCCESS [ 36.039 s] [INFO] Apache cTAKES Temporal Information Extraction ...... SUCCESS [02:08 min] [INFO] Apache cTAKES CoReference Resolver ................. FAILURE [ 56.172 s] [INFO] Apache cTAKES Resources drug-ner ................... SUCCESS [ 35.137 s] [INFO] Apache cTAKES Drug NER ............................. SUCCESS [ 42.828 s] [INFO] Apache cTAKES Resources side-effect ................ SUCCESS [ 35.904 s] [INFO] Apache cTAKES Side Effects ......................... SUCCESS [ 52.429 s] [INFO] Apache cTAKES Resources smoking-status ............. SUCCESS [ 31.857 s] [INFO] Apache cTAKES Smoking Status ....................... SUCCESS [ 6.521 s] [INFO] Apache cTAKES Resources assertion-zoner ............ SUCCESS [ 2.583 s] [INFO] Apache cTAKES Assertion's zoner .................... SUCCESS [ 4.519 s] [INFO] ctakes-examples-res ................................ SUCCESS [ 2.957 s] [INFO] ctakes-examples .................................... SKIPPED [INFO] Apache cTAKES Resources ctakes-ytex-res ............ SUCCESS [ 22.086 s] [INFO] Apache cTAKES YTEX ................................. SUCCESS [01:45 min] [INFO] Apache cTAKES YTEX UIMA ............................ FAILURE [03:07 min] [INFO] Apache cTAKES YTEX Web ............................. SUCCESS [02:16 min] [INFO] Apache cTAKES Distribution ......................... SKIPPED [INFO] Apache cTAKES Regression-test ...................... SKIPPED [INFO] Apache cTAKES template filler ...................... SUCCESS [01:17 min] [INFO] ------------------------------------------------------------------------ [INFO] BUILD FAILURE [INFO] ------------------------------------------------------------------------ [INFO] Total time: 01:01 h [INFO] Finished at: 2017-11-17T20:49:56Z [INFO] Final Memory: 173M/3345M [INFO] ------------------------------------------------------------------------ [ERROR] Failed to execute goal org.apache.maven.plugins:maven-compiler-plugin:2.4:compile (default-compile) on project ctakes-coreference: Compilation failure [ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-coreference/src/main/java/org/apache/ctakes/coreference/eval/EvaluationOfEventCoreference.java>:[21,45] error: package jdk.internal.org.objectweb.asm.commons does not exist [ERROR] -> [Help 1] [ERROR] Failed to execute goal org.apache.maven.plugins:maven-surefire-plugin:2.12.1:test (surefire-it) on project ctakes-ytex-uima: There are test failures. [ERROR] [ERROR] Please refer to <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-ytex-uima/target/surefire-reports> for the individual test results. [ERROR] -> [Help 1] [ERROR] [ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch. [ERROR] Re-run Maven using the -X switch to enable full debug logging. [ERROR] [ERROR] For more information about the errors and possible solutions, please read the following articles: [ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoFailureException [ERROR] [ERROR] After correcting the problems, you can resume the build with the command [ERROR] mvn <goals> -rf :ctakes-coreference Sending e-mails to: [email protected] Sending e-mails to: [email protected] [email protected] Sending e-mails to: [email protected] channel stopped
