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https://issues.apache.org/jira/browse/CTAKES-334?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=16595701#comment-16595701
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Alex Zbarcea edited comment on CTAKES-334 at 8/28/18 11:02 PM:
---------------------------------------------------------------
Not sure If I get the same thing. Using the {{trunk}}, I get:
{code:java}
[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 5.228 s
- in org.apache.ctakes.ytex.ConceptDaoTest
[INFO] Running org.apache.ctakes.ytex.umls.dao.UMLSDaoTest
[ERROR] Tests run: 1, Failures: 0, Errors: 1, Skipped: 0, Time elapsed: 0.004 s
<<< FAILURE! - in org.apache.ctakes.ytex.umls.dao.UMLSDaoTest
[ERROR] testGetAllAuiStr(org.apache.ctakes.ytex.umls.dao.UMLSDaoTest) Time
elapsed: 0 s <<< ERROR!
java.lang.IllegalStateException: BeanFactory not initialized or already closed
- call 'refresh' before accessing beans via the ApplicationContext
at
org.apache.ctakes.ytex.umls.dao.UMLSDaoTest.setUp(UMLSDaoTest.java:62)
[INFO]
[INFO] Results:
[INFO]
[ERROR] Errors:
[ERROR] UMLSDaoTest.setUp:62 ? IllegalState BeanFactory not initialized or
already clo...
[INFO]
[ERROR] Tests run: 2, Failures: 0, Errors: 1, Skipped: 0
(...)
[INFO] Apache cTAKES Resources ctakes-ytex-res ............ SUCCESS [ 0.161 s]
[INFO] Apache cTAKES YTEX ................................. FAILURE [ 40.698 s]
[INFO] Apache cTAKES YTEX UIMA ............................ SKIPPED
(...){code}
[~ghill], can you provide more details regarding your failure (a stacktrace, or
the {{main()}} you're executing ?)
was (Author: alexz):
Not sure If I get the same thing. Using the trunk, I get:
{code:java}
[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 5.228 s
- in org.apache.ctakes.ytex.ConceptDaoTest
[INFO] Running org.apache.ctakes.ytex.umls.dao.UMLSDaoTest
[ERROR] Tests run: 1, Failures: 0, Errors: 1, Skipped: 0, Time elapsed: 0.004 s
<<< FAILURE! - in org.apache.ctakes.ytex.umls.dao.UMLSDaoTest
[ERROR] testGetAllAuiStr(org.apache.ctakes.ytex.umls.dao.UMLSDaoTest) Time
elapsed: 0 s <<< ERROR!
java.lang.IllegalStateException: BeanFactory not initialized or already closed
- call 'refresh' before accessing beans via the ApplicationContext
at
org.apache.ctakes.ytex.umls.dao.UMLSDaoTest.setUp(UMLSDaoTest.java:62)
[INFO]
[INFO] Results:
[INFO]
[ERROR] Errors:
[ERROR] UMLSDaoTest.setUp:62 ? IllegalState BeanFactory not initialized or
already clo...
[INFO]
[ERROR] Tests run: 2, Failures: 0, Errors: 1, Skipped: 0
(...)
[INFO] Apache cTAKES Resources ctakes-ytex-res ............ SUCCESS [ 0.161 s]
[INFO] Apache cTAKES YTEX ................................. FAILURE [ 40.698 s]
[INFO] Apache cTAKES YTEX UIMA ............................ SKIPPED
(...){code}
[~ghill], can you provide more details regarding your failure (a stacktrace, or
the {{main()}} you're executing ?)
> GramMatrixExporterImpl initialization failed
> --------------------------------------------
>
> Key: CTAKES-334
> URL: https://issues.apache.org/jira/browse/CTAKES-334
> Project: cTAKES
> Issue Type: Bug
> Components: ctakes-ytex
> Affects Versions: 3.2.0, 3.1.1
> Reporter: vijay
> Assignee: Alex Zbarcea
> Priority: Major
> Fix For: 3.2.1
>
> Attachments: ctakes-334.patch,
> fix-SetupAuiFirstWord.CTAKES-334.svn-01.patch
>
>
> Failed to obtain BeanInfo for class
> [org.apache.ctakes.ytex.weka.GramMatrixExporterImpl]; nested exception is
> java.beans.IntrospectionException: type mismatch between read and write
> methods
> {code}
> Exception in thread "main" java.lang.ExceptionInInitializerError
> [java] at
> org.apache.ctakes.ytex.tools.SetupAuiFirstWord.setupAuiFirstWord(SetupAuiFirstWord.java:190)
> [java] at
> org.apache.ctakes.ytex.tools.SetupAuiFirstWord.main(SetupAuiFirstWord.java:186)
> [java] Caused by:
> org.springframework.beans.factory.access.BootstrapException: Unable to
> initialize group definition. Group resource name
> [classpath*:org/apache/ctakes/ytex/kernelBeanRefContext.xml], factory key
> [kernelApplicationContext]; nested exception is
> org.springframework.beans.factory.BeanCreationException: Error creating bean
> with name 'kernelApplicationContext' defined in URL
> [jar:file:/media/nino/Dati/apache-ctakes-3.2.0/lib/ctakes-ytex-web-3.2.0-classes.jar!/org/apache/ctakes/ytex/kernelBeanRefContext.xml]:
> Instantiation of bean failed; nested exception is
> org.springframework.beans.BeanInstantiationException: Could not instantiate
> bean class
> [org.springframework.context.support.ClassPathXmlApplicationContext]:
> Constructor threw exception; nested exception is
> org.springframework.beans.factory.BeanCreationException: Error creating bean
> with name 'gramMatrixExporter' defined in class path resource
> [org/apache/ctakes/ytex/beans-kernel.xml]: Initialization of bean failed;
> nested exception is org.springframework.beans.FatalBeanException: Failed to
> obtain BeanInfo for class
> [org.apache.ctakes.ytex.weka.GramMatrixExporterImpl]; nested exception is
> java.beans.IntrospectionException: type mismatch between read and write
> methods
> [java] at
> org.springframework.beans.factory.access.SingletonBeanFactoryLocator.useBeanFactory(SingletonBeanFactoryLocator.java:386)
> [java] at
> org.apache.ctakes.ytex.kernel.KernelContextHolder.<clinit>(KernelContextHolder.java:28)
> [java] ... 2 more
> [java] Caused by:
> org.springframework.beans.factory.BeanCreationException: Error creating bean
> with name 'kernelApplicationContext' defined in URL
> [jar:file:/media/nino/Dati/apache-ctakes-3.2.0/lib/ctakes-ytex-web-3.2.0-classes.jar!/org/apache/ctakes/ytex/kernelBeanRefContext.xml]:
> Instantiation of bean failed; nested exception is
> org.springframework.beans.BeanInstantiationException: Could not instantiate
> bean class
> [org.springframework.context.support.ClassPathXmlApplicationContext]:
> Constructor threw exception; nested exception is
> org.springframework.beans.factory.BeanCreationException: Error creating bean
> with name 'gramMatrixExporter' defined in class path resource
> [org/apache/ctakes/ytex/beans-kernel.xml]: Initialization of bean failed;
> nested exception is org.springframework.beans.FatalBeanException: Failed to
> obtain BeanInfo for class
> [org.apache.ctakes.ytex.weka.GramMatrixExporterImpl]; nested exception is
> java.beans.IntrospectionException: type mismatch between read and write
> methods
> [java] at
> org.springframework.beans.factory.support.ConstructorResolver.autowireConstructor(ConstructorResolver.java:288)
> [java] at
> org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.autowireConstructor(AbstractAutowireCapableBeanFactory.java:1035)
> [java] at
> org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBeanInstance(AbstractAutowireCapableBeanFactory.java:939)
> [java] at
> org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:485)
> [java] at
> org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:456)
> [java] at
> org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:294)
> [java] at
> org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:225)
> [java] at
> org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:291)
> [java] at
> org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:193)
> [java] at
> org.springframework.beans.factory.support.DefaultListableBeanFactory.preInstantiateSingletons(DefaultListableBeanFactory.java:609)
> [java] at
> org.springframework.context.support.AbstractApplicationContext.finishBeanFactoryInitialization(AbstractApplicationContext.java:918)
> [java] at
> org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:469)
> [java] at
> org.springframework.context.access.ContextSingletonBeanFactoryLocator.initializeDefinition(ContextSingletonBeanFactoryLocator.java:143)
> [java] at
> org.springframework.beans.factory.access.SingletonBeanFactoryLocator.useBeanFactory(SingletonBeanFactoryLocator.java:381)
> [java] ... 3 more
> [java] Caused by: org.springframework.beans.BeanInstantiationException:
> Could not instantiate bean class
> [org.springframework.context.support.ClassPathXmlApplicationContext]:
> Constructor threw exception; nested exception is
> org.springframework.beans.factory.BeanCreationException: Error creating bean
> with name 'gramMatrixExporter' defined in class path resource
> [org/apache/ctakes/ytex/beans-kernel.xml]: Initialization of bean failed;
> nested exception is org.springframework.beans.FatalBeanException: Failed to
> obtain BeanInfo for class
> [org.apache.ctakes.ytex.weka.GramMatrixExporterImpl]; nested exception is
> java.beans.IntrospectionException: type mismatch between read and write
> methods
> [java] at
> org.springframework.beans.BeanUtils.instantiateClass(BeanUtils.java:162)
> [java] at
> org.springframework.beans.factory.support.SimpleInstantiationStrategy.instantiate(SimpleInstantiationStrategy.java:110)
> [java] at
> org.springframework.beans.factory.support.ConstructorResolver.autowireConstructor(ConstructorResolver.java:280)
> [java] ... 16 more
> [java] Caused by:
> org.springframework.beans.factory.BeanCreationException: Error creating bean
> with name 'gramMatrixExporter' defined in class path resource
> [org/apache/ctakes/ytex/beans-kernel.xml]: Initialization of bean failed;
> nested exception is org.springframework.beans.FatalBeanException: Failed to
> obtain BeanInfo for class
> [org.apache.ctakes.ytex.weka.GramMatrixExporterImpl]; nested exception is
> java.beans.IntrospectionException: type mismatch between read and write
> methods
> [java] at
> org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:527)
> [java] at
> org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:456)
> [java] at
> org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:294)
> [java] at
> org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:225)
> [java] at
> org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:291)
> [java] at
> org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:193)
> [java] at
> org.springframework.beans.factory.support.DefaultListableBeanFactory.preInstantiateSingletons(DefaultListableBeanFactory.java:609)
> [java] at
> org.springframework.context.support.AbstractApplicationContext.finishBeanFactoryInitialization(AbstractApplicationContext.java:918)
> [java] at
> org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:469)
> [java] at
> org.springframework.context.support.ClassPathXmlApplicationContext.<init>(ClassPathXmlApplicationContext.java:139)
> [java] at
> org.springframework.context.support.ClassPathXmlApplicationContext.<init>(ClassPathXmlApplicationContext.java:93)
> [java] at
> sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
> [java] at
> sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62)
> [java] at
> sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
> [java] at
> java.lang.reflect.Constructor.newInstance(Constructor.java:408)
> [java] at
> org.springframework.beans.BeanUtils.instantiateClass(BeanUtils.java:147)
> [java] ... 18 more
> [java] Caused by: org.springframework.beans.FatalBeanException: Failed
> to obtain BeanInfo for class
> [org.apache.ctakes.ytex.weka.GramMatrixExporterImpl]; nested exception is
> java.beans.IntrospectionException: type mismatch between read and write
> methods
> [java] at
> org.springframework.beans.CachedIntrospectionResults.<init>(CachedIntrospectionResults.java:262)
> [java] at
> org.springframework.beans.CachedIntrospectionResults.forClass(CachedIntrospectionResults.java:149)
> [java] at
> org.springframework.beans.BeanWrapperImpl.getCachedIntrospectionResults(BeanWrapperImpl.java:324)
> [java] at
> org.springframework.beans.BeanWrapperImpl.getPropertyDescriptors(BeanWrapperImpl.java:331)
> [java] at
> org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.filterPropertyDescriptorsForDependencyCheck(AbstractAutowireCapableBeanFactory.java:1242)
> [java] at
> org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.populateBean(AbstractAutowireCapableBeanFactory.java:1101)
> [java] at
> org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:517)
> [java] ... 33 more
> [java] Caused by: java.beans.IntrospectionException: type mismatch
> between read and write methods
> [java] at
> java.beans.PropertyDescriptor.findPropertyType(PropertyDescriptor.java:659)
> [java] at
> java.beans.PropertyDescriptor.setReadMethod(PropertyDescriptor.java:256)
> [java] at
> org.springframework.beans.ExtendedBeanInfo.addOrUpdatePropertyDescriptor(ExtendedBeanInfo.java:282)
> [java] at
> org.springframework.beans.ExtendedBeanInfo.addOrUpdatePropertyDescriptor(ExtendedBeanInfo.java:180)
> [java] at
> org.springframework.beans.ExtendedBeanInfo.<init>(ExtendedBeanInfo.java:100)
> [java] at
> org.springframework.beans.CachedIntrospectionResults.<init>(CachedIntrospectionResults.java:224)
> [java] ... 39 more
> {code}
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