On Mon, 30 Aug 2021, Rainer J.H. Brandt via ntg-context wrote:

> But, as I said, my texmf.cnf sets TEXMFCACHE to $TEXMFSYSVAR;$TEXMFVAR,
> and TEXMFSYSVAR is /var/opt/texlive.  Why is that ignored?

mtxrun (and context MKIV and LMTX) do not read texmf.cnf rather read values 
from contextcnf.lua (it used to be texmfcnf.lua, not sure how TL handles this).

You can also try setting it explicitly in the shell:

$ TEXMFCACHE=/var/opt/texlive/texmf-cache mtxrun --generate

Aditya
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