Hi!
thanks to everybody, I couldn't make it with OSX, with all possible
combinations of versions and packages, there must be some strange default
underneath because I always got the same error.
Now I installed Vagrant and as Pedro said everything is running smoothly,
excepting one (different) error:
E Exception: Encoding Error: encoding value 1.000000
expected [1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0]
E got None
tests/unit/py2/nupic/encoders/nonuniformscalar_test.py:54: Exception
Should I worry about it?
Thanks for all the help!
Gari
On Mon, Sep 30, 2013 at 9:56 PM, Pedro Tabacof <[email protected]> wrote:
> Hello,
>
> I tried building NuPIC first on a 32bit Linux Mint 15, unsuccessfully.
> Then I changed to the 64bit version, and while I managed build NuPIC, there
> were some failed tests and the hotgym example didn't work through the OPF
> client. I used the latest 2.7 Python version alongside the latest 4.7 GCC,
> without any Python 2.6 on my virtual machine. Unfortunately since I tried
> so many things, I don't have the specific error logs, but most of them were
> known issues regarding 32 bit Linux and the lack of Python 2.6.
>
> Instead of trying to hack my way through the Linux incompatibilities
> issues (since Python 2.6 and Pythonbrew are deprecated, it's not fun to try
> to get them working), I've decided to take another approach and use the
> Vagrant VM (
> https://github.com/numenta/nupic/wiki/Running-Nupic-in-a-Virtual-Machine).
>
> So far it has been a much smoother experience and I have finally managed
> to pass all tests but one. While doing the Python test (run_tests.sh), the
> script accused this problem:
>
> ==================================== ERRORS
> ====================================
>
> ERROR collecting
> tests/unit/py2/nupic/bindings/algorithms/fast_cla_classifier_test.py
> tests/unit/py2/nupic/bindings/algorithms/fast_cla_classifier_test.py:43:
> in <module>
> > from py2.nupic.algorithms import cla_classifier_test
> E ImportError: No module named py2.nupic.algorithms
>
> Should I worry about it? Anyways, if anyone is encountering compilation or
> test problems, I highly recommend to use the Vagrant VM. Thanks for the
> person who set it up and wrote the walkthrough!
>
> Pedro.
>
>
> On Mon, Sep 30, 2013 at 12:38 PM, Matthew Taylor <[email protected]> wrote:
>
>> Even better! :) Thanks, Austin.
>>
>> ---------
>> Matt Taylor
>> OS Community Flag-Bearer
>> Numenta
>>
>>
>> On Mon, Sep 30, 2013 at 8:26 AM, Austin Marshall <[email protected]>wrote:
>>
>>> With the exception of matplotlib and pytz (which are, for the time
>>> being, bundled with nupic), the list of modules which are explicitly
>>> required by nupic can be found in
>>> https://github.com/numenta/nupic/blob/master/external/common/requirements.txt.
>>> Some of those, have separate requirements, all of which are currently
>>> checked in at
>>> https://github.com/numenta/nupic/tree/master/external/common/pip-cache.
>>>
>>> For an isolated environment with the dependencies pre-installed, there
>>> is https://github.com/numenta/nupic-darwin64 and
>>> https://github.com/numenta/nupic-linux64 for OS X and Linux
>>> respectively. For other platforms, both of those projects include a
>>> Makefile which can be useful for reconstructing the environment. We've
>>> started to use these repositories internally at Grok and it's been really
>>> helpful for some of the corner case build issues. We've also thrown around
>>> the idea of regularly publishing a tarball with a pre-built version of
>>> nupic and the dependencies pre-installed. If that's something you're
>>> interested in, please let me know.
>>>
>>>
>>> On Mon, Sep 30, 2013 at 7:58 AM, Matthew Taylor <[email protected]>wrote:
>>>
>>>> Here are all the python modules returned by "pip freeze" (minus the
>>>> system libs):
>>>>
>>>> https://gist.github.com/rhyolight/6764986
>>>>
>>>> I'm not certain which ones are required by NuPIC, so I left them all in
>>>> for now. Please feel free to edit this gist and highlight those known to be
>>>> required by NuPIC.
>>>>
>>>> ---------
>>>> Matt Taylor
>>>> OS Community Flag-Bearer
>>>> Numenta
>>>>
>>>>
>>>> On Sun, Sep 29, 2013 at 7:43 AM, freeha azmat <[email protected]>wrote:
>>>>
>>>>> I have Moutain lion 10.8.3.
>>>>>
>>>>> I will really appreciate if somebody can tell the list of all packages
>>>>> to be included in nupic and cerebo both.
>>>>>
>>>>> Thanks alot
>>>>>
>>>>>
>>>>> Freeha Azmat
>>>>>
>>>>> *From:* Garikoitz Lerma-Usabiaga <[email protected]>
>>>>>
>>>>> *To:* NuPIC general mailing list. <[email protected]>
>>>>> *Sent:* Sunday, September 29, 2013 8:58 AM
>>>>>
>>>>> *Subject:* Re: [nupic-dev] Installation Error Resolved
>>>>>
>>>>> I have Snow Leopard, I don't know about Freeha.
>>>>>
>>>>> I did a restart and cleaninstall.sh, but it is not working either.
>>>>> Always the same error. Is there something else I should try? It is a work
>>>>> laptop, so maybe they had something strange installed before? I think not,
>>>>> and I deleted python and installed it again.
>>>>>
>>>>> About gcc, it had Xcode with gcc2.1, but I updated it to gcc4.7 via
>>>>> MacPorts.
>>>>>
>>>>> It would be great if somebody with an OSX working environment would
>>>>> send the version status of all installed software and environment
>>>>> variables...
>>>>>
>>>>> Thank you very much everybody,
>>>>> Gari
>>>>>
>>>>>
>>>>> On Sun, Sep 29, 2013 at 3:01 PM, Marek Otahal <[email protected]>wrote:
>>>>>
>>>>> @Garikoitz what OS, and you mean Nupic, or Cerebro?
>>>>> Try a cleanbuild, maybe even a system restart (if you made some bigger
>>>>> changes to the installed base). Let us know how's it doin'?
>>>>> Cheers, Mark
>>>>>
>>>>>
>>>>> On Sun, Sep 29, 2013 at 2:49 PM, Garikoitz Lerma-Usabiaga <
>>>>> [email protected]> wrote:
>>>>>
>>>>> Hi!
>>>>> it would be great to have them in preferred order of
>>>>> installation/compiling too.
>>>>>
>>>>> I upgraded python to 2.7, gcc to 4.7, and as far as I know I meet
>>>>> all the requirements on the wiki page, but I am still getting the same
>>>>> error RegionImplFactory.cpp:169, and libcpp_region.dylib, 9): Symbol not
>>>>> found: _PyCObject_Type.
>>>>>
>>>>> If anybody has a tip for this specific error instead of removing and
>>>>> installing everything again I would be grateful...
>>>>>
>>>>> thanks again,
>>>>> Gari
>>>>>
>>>>>
>>>>> On Sun, Sep 29, 2013 at 2:28 PM, freeha azmat <[email protected]>wrote:
>>>>>
>>>>> Hi,
>>>>>
>>>>> Thanks for the help provided earlier. I was able to build nupic on
>>>>> Ubuntu 10 and Ubuntu 13 too.
>>>>> Now I tried to take a step forward by installing "Cerebo" ,but all
>>>>> the commands for cerebo are written according to OSX. So I decided to
>>>>> install OSX on my VMware now and I am goin to use OSX for first time so
>>>>> totally lost with commands.
>>>>>
>>>>> I request Mac users to please help me by specifying the commands/list
>>>>> of packages that are used for building "nupic" in OSX.
>>>>>
>>>>> Thanks a lot
>>>>>
>>>>>
>>>>> Freeha Azmat
>>>>>
>>>>>
>>>>>
>>>>>
>>>>> *From:* Matthew Taylor <[email protected]>
>>>>>
>>>>> *To:* NuPIC general mailing list. <[email protected]>
>>>>> *Sent:* Saturday, September 28, 2013 10:18 AM
>>>>> *Subject:* Re: [nupic-dev] Installation Error Resolved
>>>>>
>>>>> Regarding the Cerebro README, I'll try to get it sorted out when I
>>>>> have the time. I'd like to identify exactly what dependencies it
>>>>> requires, so I don't add a bunch of installation requirements to the
>>>>> README that aren't necessary, so I'll need to try a fresh install on a
>>>>> VM to see what happens. If anyone has more details on this issue,
>>>>> please tell me.
>>>>>
>>>>> Regarding the NuPIC error, I think you need to remove a
>>>>> previously-installed version of mathplotlib:
>>>>> http://markmail.org/message/qwspz6sjc5bljogy
>>>>>
>>>>> "However, by uninstalling the version of matplotlib installed by apt
>>>>> and
>>>>> reinstalling via pip in addition to pulling the fix you suggested I
>>>>> have gotten this working."
>>>>> ---------
>>>>> Matt Taylor
>>>>> OS Community Flag-Bearer
>>>>> Numenta
>>>>>
>>>>>
>>>>> On Fri, Sep 27, 2013 at 9:04 PM, freeha azmat <[email protected]>
>>>>> wrote:
>>>>> > Readme only contains :
>>>>> > libevent
>>>>> > mongodb
>>>>> > https://github.com/numenta/nupic.cerebro
>>>>> >
>>>>> > Secondly I installed nupic on Ubuntu 10 before and build was
>>>>> successful with
>>>>> > all tests passed because the default version of the python installed
>>>>> is
>>>>> > python 2.6.
>>>>> >
>>>>> > Now i tried to install nupic on Ubuntu 13 and i found build is
>>>>> successful
>>>>> > and all tests are passed except one which refers to python 2.6. As
>>>>> ubuntu 13
>>>>> > contains python 2.7 as default, so it is referring to one of the
>>>>> error due
>>>>> > to python 2.6 .Is it ok if i proceed with this error ?
>>>>> >
>>>>> > cd $NTA
>>>>> > ./bin/run_tests.sh
>>>>> >
>>>>> >
>>>>> > tests/unit/py2/regions/knn_anomaly_classifier_region_test.py <-
>>>>> >
>>>>> /home/freeha1/nupic-master/nta/eng/tests/unit/py2/regions/knn_anomaly_classifier_region_test.py:356:
>>>>> > tests.unit.py2.regions.knn_anomaly_classifier_region_test PASSED
>>>>> >
>>>>> > ==================================== ERRORS
>>>>> > ====================================
>>>>> > ________ ERROR collecting
>>>>> tests/unit/py2/nupic/data/aggregator_test.py
>>>>> > _________
>>>>> > tests/unit/py2/nupic/data/aggregator_test.py:27: in <module>
>>>>> >> from nupic.data import aggregator
>>>>> > lib/python2.7/site-packages/nupic/data/aggregator.py:30: in <module>
>>>>> >> from nupic.frameworks.prediction import utils
>>>>> > lib/python2.7/site-packages/nupic/frameworks/prediction/utils.py:26:
>>>>> in
>>>>> > <module>
>>>>> >> import nupic.frameworks.prediction.callbacks as callbacks
>>>>> >
>>>>> lib/python2.7/site-packages/nupic/frameworks/prediction/callbacks.py:29:
>>>>> in
>>>>> > <module>
>>>>> >> import pylab
>>>>> > lib/python2.7/site-packages/pylab.py:1: in <module>
>>>>> >> from matplotlib.pylab import *
>>>>> > lib/python2.7/site-packages/matplotlib/pylab.py:206: in <module>
>>>>> >> from matplotlib import mpl # pulls in most modules
>>>>> > lib/python2.7/site-packages/matplotlib/mpl.py:1: in <module>
>>>>> >> from matplotlib import artist
>>>>> > lib/python2.7/site-packages/matplotlib/artist.py:5: in <module>
>>>>> >> from transforms import Bbox, IdentityTransform, TransformedBbox,
>>>>> >> TransformedPath
>>>>> > lib/python2.7/site-packages/matplotlib/transforms.py:34: in <module>
>>>>> >> from matplotlib._path import affine_transform
>>>>> > E ImportError: libpython2.6.so.1.0: cannot open shared object file:
>>>>> No
>>>>> > such file or directory
>>>>> > =============== 357 passed, 4 skipped, 1 error in 77.70 seconds
>>>>> > ===============
>>>>> >
>>>>> > python $NUPIC/examples/opf/bin/OpfRunExperiment.py
>>>>> > $NUPIC/examples/opf/experiments/multistep/hotgym/
>>>>> >
>>>>> >
>>>>> >
>>>>> >
>>>>> >
>>>>> /home/freeha1/nupic-master/nta/eng/lib/python2.7/site-packages/nupic/data/stream_reader.py:25:
>>>>> > UserWarning: Module pkg_resources was already imported from
>>>>> >
>>>>> /home/freeha1/nupic-master/nta/eng/lib/python2.7/site-packages/pkg_resources.pyc,
>>>>> > but /usr/lib/python2.7/dist-packages is being added to sys.path
>>>>> > from pkg_resources import resource_filename
>>>>> >
>>>>> /home/freeha1/nupic-master/nta/eng/lib/python2.7/site-packages/nupic/data/stream_reader.py:25:
>>>>> > UserWarning: Module site was already imported from
>>>>> > /usr/lib/python2.7/site.pyc, but /usr/lib/python2.7/dist-packages is
>>>>> being
>>>>> > added to sys.path
>>>>> > from pkg_resources import resource_filename
>>>>> >
>>>>> > Traceback (most recent call last):
>>>>> > File
>>>>> "/home/freeha1/nupic-master/examples/opf/bin/OpfRunExperiment.py",
>>>>> > line 29, in <module>
>>>>> > from nupic.frameworks.opf.experiment_runner import (runExperiment,
>>>>> > File
>>>>> >
>>>>> "/home/freeha1/nupic-master/nta/eng/lib/python2.7/site-packages/nupic/frameworks/opf/experiment_runner.py",
>>>>> > line 38, in <module>
>>>>> > from nupic.frameworks.opf import opfbasicenvironment, opfhelpers
>>>>> > File
>>>>> >
>>>>> "/home/freeha1/nupic-master/nta/eng/lib/python2.7/site-packages/nupic/frameworks/opf/opfbasicenvironment.py",
>>>>> > line 58, in <module>
>>>>> > from nupic.data.stream_reader import StreamReader
>>>>> > File
>>>>> >
>>>>> "/home/freeha1/nupic-master/nta/eng/lib/python2.7/site-packages/nupic/data/stream_reader.py",
>>>>> > line 30, in <module>
>>>>> > from nupic.data.aggregator import Aggregator
>>>>> > File
>>>>> >
>>>>> "/home/freeha1/nupic-master/nta/eng/lib/python2.7/site-packages/nupic/data/aggregator.py",
>>>>> > line 30, in <module>
>>>>> > from nupic.frameworks.prediction import utils
>>>>> > File
>>>>> >
>>>>> "/home/freeha1/nupic-master/nta/eng/lib/python2.7/site-packages/nupic/frameworks/prediction/utils.py",
>>>>> > line 26, in <module>
>>>>> > import nupic.frameworks.prediction.callbacks as callbacks
>>>>> > File
>>>>> >
>>>>> "/home/freeha1/nupic-master/nta/eng/lib/python2.7/site-packages/nupic/frameworks/prediction/callbacks.py",
>>>>> > line 29, in <module>
>>>>> > import pylab
>>>>> > File
>>>>> >
>>>>> "/home/freeha1/nupic-master/nta/eng/lib/python2.7/site-packages/pylab.py",
>>>>> > line 1, in <module>
>>>>> > from matplotlib.pylab import *
>>>>> > File
>>>>> >
>>>>> "/home/freeha1/nupic-master/nta/eng/lib/python2.7/site-packages/matplotlib/pylab.py",
>>>>> > line 206, in <module>
>>>>> > from matplotlib import mpl # pulls in most modules
>>>>> > File
>>>>> >
>>>>> "/home/freeha1/nupic-master/nta/eng/lib/python2.7/site-packages/matplotlib/mpl.py",
>>>>> > line 1, in <module>
>>>>> > from matplotlib import artist
>>>>> > File
>>>>> >
>>>>> "/home/freeha1/nupic-master/nta/eng/lib/python2.7/site-packages/matplotlib/artist.py",
>>>>> > line 5, in <module>
>>>>> > from transforms import Bbox, IdentityTransform, TransformedBbox,
>>>>> > TransformedPath
>>>>> > File
>>>>> >
>>>>> "/home/freeha1/nupic-master/nta/eng/lib/python2.7/site-packages/matplotlib/transforms.py",
>>>>> > line 34, in <module>
>>>>> > from matplotlib._path import affine_transform
>>>>> > ImportError: libpython2.6.so.1.0: cannot open shared object file: No
>>>>> such
>>>>> > file or directory
>>>>> >
>>>>> >
>>>>> >
>>>>> >
>>>>> >
>>>>> >
>>>>> >
>>>>> > On Fri, Sep 27, 2013 at 6:43 AM, freeha azmat <[email protected]>
>>>>> wrote:
>>>>> >
>>>>> > but somebody pointed out 3 days before that there are some other
>>>>> packages
>>>>> > required.Can you please state them again
>>>>> >
>>>>> >
>>>>> > http://markmail.org/message/ldbwsjviyxdwhvgj
>>>>> >
>>>>> > I thought the README was updated for all the necessary requirements.
>>>>> Please
>>>>> > let me know if it is not.
>>>>> >
>>>>> >
>>>>> >
>>>>> > ---------
>>>>> > Matt Taylor
>>>>> > OS Community Flag-Bearer
>>>>> > Numenta
>>>>> >
>>>>> > _______________________________________________
>>>>> > nupic mailing list
>>>>> > [email protected]
>>>>> > http://lists.numenta.org/mailman/listinfo/nupic_lists.numenta.org
>>>>> >
>>>>> >
>>>>> >
>>>>> > _______________________________________________
>>>>> > nupic mailing list
>>>>> > [email protected]
>>>>> > http://lists.numenta.org/mailman/listinfo/nupic_lists.numenta.org
>>>>> >
>>>>>
>>>>> _______________________________________________
>>>>> nupic mailing list
>>>>> [email protected]
>>>>> http://lists.numenta.org/mailman/listinfo/nupic_lists.numenta.org
>>>>>
>>>>>
>>>>>
>>>>> _______________________________________________
>>>>> nupic mailing list
>>>>> [email protected]
>>>>> http://lists.numenta.org/mailman/listinfo/nupic_lists.numenta.org
>>>>>
>>>>>
>>>>>
>>>>> _______________________________________________
>>>>> nupic mailing list
>>>>> [email protected]
>>>>> http://lists.numenta.org/mailman/listinfo/nupic_lists.numenta.org
>>>>>
>>>>>
>>>>>
>>>>>
>>>>> --
>>>>> Marek Otahal :o)
>>>>>
>>>>> _______________________________________________
>>>>> nupic mailing list
>>>>> [email protected]
>>>>> http://lists.numenta.org/mailman/listinfo/nupic_lists.numenta.org
>>>>>
>>>>>
>>>>>
>>>>> _______________________________________________
>>>>> nupic mailing list
>>>>> [email protected]
>>>>> http://lists.numenta.org/mailman/listinfo/nupic_lists.numenta.org
>>>>>
>>>>>
>>>>>
>>>>> _______________________________________________
>>>>> nupic mailing list
>>>>> [email protected]
>>>>> http://lists.numenta.org/mailman/listinfo/nupic_lists.numenta.org
>>>>>
>>>>>
>>>>
>>>> _______________________________________________
>>>> nupic mailing list
>>>> [email protected]
>>>> http://lists.numenta.org/mailman/listinfo/nupic_lists.numenta.org
>>>>
>>>>
>>>
>>> _______________________________________________
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>>> [email protected]
>>> http://lists.numenta.org/mailman/listinfo/nupic_lists.numenta.org
>>>
>>>
>>
>> _______________________________________________
>> nupic mailing list
>> [email protected]
>> http://lists.numenta.org/mailman/listinfo/nupic_lists.numenta.org
>>
>>
>
>
> --
> Pedro Tabacof,
> Unicamp - Eng. de Computação 08.
>
> _______________________________________________
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>
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