On Thu, Jul 22, 2010 at 3:58 PM, Noel O'Boyle <baoille...@gmail.com> wrote:
> Hello Tim,
>
> I've just been checking OBAlign in trunk and writing the doxygen docs.
>
> There's just one missing feature - would it be possible for you to
> alter the isomorphism mapper so that it can take an OBBitVec as a
> mask?

Yes, I had planned this but haven't done this yet. I'll add a
SetQueriedMask method.

> It's not usual to include the hydrogens in the calculate of the RMSD,
> so I would like to be able to pass an OBBitVec to the mapper that
> would just include the heavy atoms. Naturally, this should also speed
> up the mapping in the general case.

Correct.

Are you back from your holiday?

Tim

> - Noel
>

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