Bugs item #3469904, was opened at 2012-01-05 10:03 Message generated for change (Tracker Item Submitted) made by ssorgatem You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=428740&aid=3469904&group_id=40728
Please note that this message will contain a full copy of the comment thread, including the initial issue submission, for this request, not just the latest update. Category: Pybel Group: 2.3.x Status: Open Resolution: None Priority: 5 Private: No Submitted By: ssorgatem (ssorgatem) Assigned to: Noel O'Boyle (baoilleach) Summary: HBA1 descriptor calculation goes crazy, but only sometimes Initial Comment: I was doing some tests with a file for a software I'm developing, and when I did certain unrelated changes, the HBA calculation went crazy. I haven't been able to reproduce the normal behaviour, only the buggy one. I'm using OpenBabel 2.3.1 on Debian. This happens using both pybel from OpenBabel and from cinfony 1.0. So i've written a little script which shows what happens: from cinfony import pybel # or just 'import pybel', the result is the same for me testfile = 'test/test_ligands.sdf.gz' print [mol.calcdesc(['HBA1'])['HBA1'] for mol in pybel.readfile('sdf', testfile)] print [mol.calcdesc(['HBA2'])['HBA2'] for mol in pybel.readfile('sdf', testfile)] When I run it it prints the following: [35.0, 43.0, 37.0, 46.0, 37.0, 37.0] [6.0, 6.0, 6.0, 7.0, 6.0, 6.0] There can be seen that the HBA1 values are extremely high in comparison. The most annoying part is that I was getting sensible values from HBA1 calculation in my program, but I'm not able to reproduce them (they were values almost identical to the ones of HBA2). Thank you, AdriĆ <ssorga...@gmail.com> ---------------------------------------------------------------------- You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=428740&aid=3469904&group_id=40728 ------------------------------------------------------------------------------ Ridiculously easy VDI. With Citrix VDI-in-a-Box, you don't need a complex infrastructure or vast IT resources to deliver seamless, secure access to virtual desktops. With this all-in-one solution, easily deploy virtual desktops for less than the cost of PCs and save 60% on VDI infrastructure costs. Try it free! http://p.sf.net/sfu/Citrix-VDIinabox _______________________________________________ OpenBabel-Devel mailing list OpenBabel-Devel@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/openbabel-devel