Thanks for this Noel.
I realise there was no java build flag in CTest after I last emailed you,
have added it now.
Will be in touch again soon
Dave
On 17 June 2012 11:41, Noel O'Boyle <baoille...@gmail.com> wrote:
> Sounds good.
>
> It should take the same time as in the GUI. But on subsequent builds,
> it will only recompile components that have been updated, along with
> dependencies. So modifications to atom.h (a core header file) will be
> slower to recompile than modifications to smilesformat.cpp (a plugin).
>
> The jar file doesn't exist in SVN. It needs to be built. You should
> install swig 2.0.7 and edit the ctest script file accordingly.
>
> - Noel
>
> On 17 June 2012 00:27, N David Brown <hubd...@gmail.com> wrote:
> > ..so I'm back home again and have checked, it appears that script is
> > compiling the project; the bin/Release folder is generated. I'm just
> amazed
> > how fast it is compared to building through the Visual Studio GUI. Why is
> > this? Because the OB gui isn't being built?
> >
> > I'm hoping to finalise the POM with those additions I mentioned tomorrow,
> > I'll be in touch again when it's ready for public consumption.
> >
> > Dave
> >
> >
> >
> > On 16 June 2012 20:21, N David Brown <hubd...@gmail.com> wrote:
> >>
> >> Hi Noel,
> >>
> >> Forgive the delay, this work is for my PhD which I'm completing in my
> >> spare time outside of work.
> >>
> >> I've configured a POM that contains redefinable properties for all paths
> >> and ON/OFF flags in the .make, then generates a .make with values
> >> substituted in. Then it executes the .make . This structure is
> >> cross-platform compliant, though I've only tested it on Windows 7 64
> bit.
> >>
> >> The next step is to configure the POM to generate a new JAR containing
> >> openbabel.jar and the cpp libraries etc. This will enable submission to
> a
> >> public maven repository as originally intended.
> >>
> >> Question: the ctest script is only generating the project solution,
> >> correct? It shouldn't also build the project, should it? Because it's
> >> completing successfully, but far too quickly to be doing that... I'm
> sure I
> >> can identify whether libs and dlls have been generated but I'd like to
> know
> >> what it should be doing.
> >>
> >> Dave
> >>
> >>
> >> On 12 June 2012 10:11, N David Brown <hubd...@gmail.com> wrote:
> >>>
> >>> Fantastic, thank you Noel. I'll get back to you towards the end of the
> >>> week assuming no issues using it in the meantime. I'll try to create
> an OB
> >>> pom by then.
> >>>
> >>> David
> >>>
> >>>
> >>>
> >>> On 12 June 2012 10:04, Noel O'Boyle <baoille...@gmail.com> wrote:
> >>>>
> >>>> Please find attached a ctest script you can run as follows:
> >>>> ctest -S ob-win-tmp.cmake -VV > cmake-build.out
> >>>>
> >>>> ("-VV" is verbose output, which is useful in case of problems)
> >>>>
> >>>> If you look through the script it should make sense, apart from the
> >>>> reference to CVS which is a quirk of ctest. BTW, before running this,
> >>>> the directory pointed to by the first line of the script needs to
> >>>> exist.
> >>>>
> >>>> - Noel
> >>>>
> >>>> On 11 June 2012 21:30, N David Brown <hubd...@gmail.com> wrote:
> >>>> > If it's not much trouble that would be great, Noel. I'd not heard of
> >>>> > CTest
> >>>> > but have looked it up now - it makes perfect sense to have CMake
> >>>> > perform the
> >>>> > build.
> >>>> >
> >>>> > This is actually ideal, as it should allow me to create a complete
> >>>> > pom.xml
> >>>> > for OB that you can include in the JAR from now on. If done
> properly,
> >>>> > this
> >>>> > will allow Java developers to introduce OB as a dependency with the
> >>>> > greatest
> >>>> > of ease.
> >>>> >
> >>>> > Let me know how you get on.
> >>>> >
> >>>> > David
> >>>> >
> >>>> >
> >>>> > On 11 June 2012 21:10, Noel O'Boyle <baoille...@gmail.com> wrote:
> >>>> >>
> >>>> >> Sounds good.
> >>>> >>
> >>>> >> Sorry - I just realised something that should make things easier.
> >>>> >> Perhaps the best way to do this is actually via a ctest script as
> you
> >>>> >> don't have to hardcode the compiler path. The one we use for our
> >>>> >> nightly builds does 4 things: (1) check out of SVN (or else
> update),
> >>>> >> (2) build, (3) run tests, (4) send results up to our dashboard.
> For a
> >>>> >> build system, you could just run steps 1 and 2.
> >>>> >>
> >>>> >> If you want to go down this route, I can put together the script
> for
> >>>> >> you.
> >>>> >>
> >>>> >> - Noel
> >>>> >>
> >>>> >> On 11 June 2012 20:58, N David Brown <hubd...@gmail.com> wrote:
> >>>> >> > Hi Noel,
> >>>> >> >
> >>>> >> > I've built it the standard way several times before. I'm now
> >>>> >> > configuring
> >>>> >> > my
> >>>> >> > own maven project to build the latest version from SVN
> >>>> >> > automatically if
> >>>> >> > it's
> >>>> >> > not found locally. The configuration's set up for CMake, it's
> just
> >>>> >> > the
> >>>> >> > build
> >>>> >> > command I need to get right.
> >>>> >> >
> >>>> >> > Thank you for providing that command and describing how you found
> >>>> >> > it,
> >>>> >> > that's
> >>>> >> > very helpful. Seeking info in the MSDN notes points to
> vcbuild.exe
> >>>> >> > and
> >>>> >> > the
> >>>> >> > options listed suggest that you can specify a project or a
> >>>> >> > solution, but
> >>>> >> > not
> >>>> >> > both.
> >>>> >> >
> >>>> >> > The way to deploy OpenBabel to a public maven repo would be to
> add
> >>>> >> > a
> >>>> >> > Maven
> >>>> >> > POM to the Java bindings (this is an xml project configuration)
> >>>> >> > that
> >>>> >> > will
> >>>> >> > grab the correct version of the library for those bindings then
> >>>> >> > build
> >>>> >> > it,
> >>>> >> > either auto-detecting the platform to infer the appropriate make
> >>>> >> > command
> >>>> >> > or
> >>>> >> > else containing a definable property which is switched on to
> >>>> >> > determine
> >>>> >> > the
> >>>> >> > build process.
> >>>> >> >
> >>>> >> > I'll post to the mailing list my configuration for Win 7 64 bit
> >>>> >> > when
> >>>> >> > it's
> >>>> >> > complete and may suggest a skeletal pom.xml that a developer
> could
> >>>> >> > expand
> >>>> >> > on.
> >>>> >> >
> >>>> >> > David
> >>>> >> >
> >>>> >> >
> >>>> >> > On 11 June 2012 20:41, Noel O'Boyle <baoille...@gmail.com>
> wrote:
> >>>> >> >>
> >>>> >> >> Have you tried first of all compiling it as per the
> instructions?
> >>>> >> >>
> >>>> >> >>
> http://openbabel.org/docs/dev/Installation/install.html#windows-msvc
> >>>> >> >>
> >>>> >> >> Here is the command that ctest uses on my machine to compile
> >>>> >> >> everything at the command-line:
> >>>> >> >> C:\PROGRA~2\MICROS~1.0\Common7\IDE\VCExpress.exe openbabel.sln
> >>>> >> >> /build
> >>>> >> >> Release /project ALL_BUILD
> >>>> >> >> (from "grep MAKE_COMMAND CMakeCache.txt")
> >>>> >> >> Note that it runs in the background without any screen output.
> >>>> >> >>
> >>>> >> >> The development version does not include the Java bindings. You
> >>>> >> >> need
> >>>> >> >> to build them yourself. Unzip Swig 2.0.7 somewhere and specify
> its
> >>>> >> >> location with -DSWIG_EXECUTABLE=whereever.
> >>>> >> >>
> >>>> >> >> We welcome anything you can do to mavenize Open Babel, but you
> >>>> >> >> probably know more about Java than the rest of us put together
> so
> >>>> >> >> it's
> >>>> >> >> pretty much down to you to sort it out and document it.
> >>>> >> >>
> >>>> >> >> - Noel
> >>>> >> >>
> >>>> >> >> On 11 June 2012 00:59, N David Brown <hubd...@gmail.com> wrote:
> >>>> >> >> > Hello all,
> >>>> >> >> >
> >>>> >> >> > I created the following batch script to run CMake on OpenBabel
> >>>> >> >> > sources
> >>>> >> >> > (located in checkout/OpenBabel), then build the generated
> >>>> >> >> > project:
> >>>> >> >> >
> >>>> >> >> > "C:\Program Files (x86)\Microsoft Visual Studio
> >>>> >> >> > 9.0\VC\vcvarsall.bat"
> >>>> >> >> > x86 &&
> >>>> >> >> > mkdir checkout\OpenBabel\build && cd checkout\OpenBabel\build
> &&
> >>>> >> >> > cmake
> >>>> >> >> > -DCMAKE_BUILD_TYPE="Release" -DZLIB_INCLUDE_DIR=..\include
> >>>> >> >> > -DLIBXML2_INCLUDE_DIR=..\include
> >>>> >> >> > -DZLIB_LIBRARY=..\windows-vc2008\zlibs\x64\lib1.lib
> >>>> >> >> > -DLIBXML2_LIBRARIES=..\windows-vc2008\libs\x64\libxml2.lib
> >>>> >> >> > -DRUN_SWIG=ON
> >>>> >> >> > -DJAVA_BINDINGS=ON -G "Visual Studio 9 2008" .. && vcbuild
> >>>> >> >> > ALL_BUILD.vcproj
> >>>> >> >> >
> >>>> >> >> > I'm facing two problems:
> >>>> >> >> >
> >>>> >> >> > I've included -DRUN_SWIG=ON simply because without it I'm
> warned
> >>>> >> >> > that
> >>>> >> >> > Java
> >>>> >> >> > bindings could not be found.
> >>>> >> >> > However, upon inclusion the following output is produced:
> >>>> >> >> >
> >>>> >> >> > -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE)
> >>>> >> >> > -- Could NOT find SWIG (missing: SWIG_EXECUTABLE SWIG_DIR)
> >>>> >> >> > -- Could NOT find SWIG (missing: SWIG_EXECUTABLE SWIG_DIR)
> >>>> >> >> > (Required
> >>>> >> >> > is
> >>>> >> >> > at
> >>>> >> >> > least version "2.0")
> >>>> >> >> >
> >>>> >> >> >
> >>>> >> >> > The vcbuild command produces the following output despite the
> >>>> >> >> > project
> >>>> >> >> > not
> >>>> >> >> > yet being built:
> >>>> >> >> >
> >>>> >> >> > Microsoft (R) Visual C++ Project Builder - Command Line
> Version
> >>>> >> >> > 9.00.30729
> >>>> >> >> > Copyright (C) Microsoft Corporation. All rights reserved.
> >>>> >> >> > Build started: Project: ALL_BUILD, Configuration: Debug|Win32
> >>>> >> >> > ALL_BUILD - up-to-date
> >>>> >> >> > Build started: Project: ALL_BUILD, Configuration:
> Release|Win32
> >>>> >> >> > ALL_BUILD - up-to-date
> >>>> >> >> > Build started: Project: ALL_BUILD, Configuration:
> >>>> >> >> > MinSizeRel|Win32
> >>>> >> >> > ALL_BUILD - up-to-date
> >>>> >> >> > Build started: Project: ALL_BUILD, Configuration:
> >>>> >> >> > RelWithDebInfo|Win32
> >>>> >> >> > ALL_BUILD - up-to-date
> >>>> >> >> >
> >>>> >> >> > I'd be extremely grateful if you can suggest how I overcome
> >>>> >> >> > these
> >>>> >> >> > issues.
> >>>> >> >> >
> >>>> >> >> > Sincere thanks,
> >>>> >> >> >
> >>>> >> >> > David
> >>>> >> >> >
> >>>> >> >> >
> >>>> >> >> >
> >>>> >> >> >
> >>>> >> >> >
> ------------------------------------------------------------------------------
> >>>> >> >> > Live Security Virtual Conference
> >>>> >> >> > Exclusive live event will cover all the ways today's security
> >>>> >> >> > and
> >>>> >> >> > threat landscape has changed and how IT managers can respond.
> >>>> >> >> > Discussions
> >>>> >> >> > will include endpoint security, mobile security and the latest
> >>>> >> >> > in
> >>>> >> >> > malware
> >>>> >> >> > threats.
> >>>> >> >> > http://www.accelacomm.com/jaw/sfrnl04242012/114/50122263/
> >>>> >> >> > _______________________________________________
> >>>> >> >> > OpenBabel-Devel mailing list
> >>>> >> >> > OpenBabel-Devel@lists.sourceforge.net
> >>>> >> >> > https://lists.sourceforge.net/lists/listinfo/openbabel-devel
> >>>> >> >> >
> >>>> >> >
> >>>> >> >
> >>>> >
> >>>> >
> >>>
> >>>
> >>
> >
>
------------------------------------------------------------------------------
Live Security Virtual Conference
Exclusive live event will cover all the ways today's security and
threat landscape has changed and how IT managers can respond. Discussions
will include endpoint security, mobile security and the latest in malware
threats. http://www.accelacomm.com/jaw/sfrnl04242012/114/50122263/
_______________________________________________
OpenBabel-Devel mailing list
OpenBabel-Devel@lists.sourceforge.net
https://lists.sourceforge.net/lists/listinfo/openbabel-devel
