Please don't send e-mail directly to me. There are many users of Open Babel and
Pybel that can help you out.
Fundamentally, pybel.py and _openbabel.so, etc. - the Python bindings for Open
Babel are not found by the python interpreter. Running "locate pybel.py" might
help. I suspect that they're somewhere in ~Tools/openbabel-install
Hope that helps,
-Geoff
> On Jun 13, 2016, at 4:22 PM, Pearl Philip <pearlphilip...@gmail.com> wrote:
>
> Dear Professor Hutchinson,
>
> I'm a user of your package Pybel and I've encountered this error I don't know
> how to fix. I installed openbabel and the python bindings on my linux
> machine. When I run this file driver.py, which is dependent on pybel, I
> encounter the following error.
>
> pphilip@waffle:~/USP-inhibition$ python driver.py
> Traceback (most recent call last):
> File "driver.py", line 3, in <module>
> from utils import create_dict, create_dataframe, extract_descriptors
> File "/home/pphilip/USP-inhibition/utils.py", line 13, in <module>
> from pychem.pychem import PyChem2d, PyChem3d
> File
> "/home/dacb/miniconda2/envs/my-rdkit-env/lib/python2.7/site-packages/pychem/pychem.py",
> line 34, in <module>
> import cpsa
> File
> "/home/dacb/miniconda2/envs/my-rdkit-env/lib/python2.7/site-packages/pychem/cpsa.py",
> line 18, in <module>
> import pybel
> ImportError: No module named pybel
>
> This is how I installed the package
>
> mkdir build
> cd build
> cmake ../openbabel-2.3.2 -DCMAKE_INSTALL_PREFIX=~/Tools/openbabel-install
> -DPYTHON_BINDINGS=ON
> make
> make install
> export PYTHONPATH=/usr/local/lib/python2.6/site-packages:$PYTHONPATH
>
> All these steps worked perfectly. I can't seem to identify the problem. I
> hope you can help me.
>
> Regards,
>
> Pearl Philip
> Graduate Student
> Department of Chemical Engineering
> University of Washington, Seattle
>
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