Pearl Philip,
I think you need to specify at least the PYTHON_INCLUDE_DIR.
Here is an example with anaconda2 installed on the home dir:
cmake .. -DPYTHON_BINDINGS=ON -DRUN_SWIG=ON
-DCMAKE_INSTALL_PREFIX=~/anaconda2
-DPYTHON_INCLUDE_DIR=~/anaconda2/include/python2.7
-DCMAKE_LIBRARY_PATH=~/anaconda2/lib
-DSWIG_DIR=~/anaconda2/share/swig/3.0.2/
-DSWIG_EXECUTABLE=~/anaconda2/bin/swig -DPYTHON_LIBRARY=~/anaconda2/lib/
libpython2.7.so -DCMAKE_BUILD_TYPE=DEBUG
Hope that helps,
Leonardo
2016-06-14 16:19 GMT-03:00 Geoffrey Hutchison <geo...@pitt.edu>:
> Please don't send e-mail directly to me. There are many users of Open
> Babel and Pybel that can help you out.
>
> Fundamentally, pybel.py and _openbabel.so, etc. - the Python bindings for
> Open Babel are not found by the python interpreter. Running "locate
> pybel.py" might help. I suspect that they're somewhere in
> ~Tools/openbabel-install
>
> Hope that helps,
> -Geoff
>
>
> On Jun 13, 2016, at 4:22 PM, Pearl Philip <pearlphilip...@gmail.com>
> wrote:
>
> Dear Professor Hutchinson,
>
> I'm a user of your package Pybel and I've encountered this error I don't
> know how to fix. I installed openbabel and the python bindings on my linux
> machine. When I run this file driver.py, which is dependent on pybel, I
> encounter the following error.
>
> pphilip@waffle:~/USP-inhibition$ python driver.py
> Traceback (most recent call last):
> File "driver.py", line 3, in <module>
> from utils import create_dict, create_dataframe, extract_descriptors
> File "/home/pphilip/USP-inhibition/utils.py", line 13, in <module>
> from pychem.pychem import PyChem2d, PyChem3d
> File
> "/home/dacb/miniconda2/envs/my-rdkit-env/lib/python2.7/site-packages/pychem/pychem.py",
> line 34, in <module>
> import cpsa
> File
> "/home/dacb/miniconda2/envs/my-rdkit-env/lib/python2.7/site-packages/pychem/cpsa.py",
> line 18, in <module>
> import pybel
> *ImportError: No module named pybel*
>
> This is how I installed the package
>
> mkdir build
> cd build
> cmake ../openbabel-2.3.2 -DCMAKE_INSTALL_PREFIX=~/Tools/openbabel-install
> -DPYTHON_BINDINGS=ON
> make
> make install
> export PYTHONPATH=/usr/local/lib/python2.6/site-packages:$PYTHONPATH
>
> All these steps worked perfectly. I can't seem to identify the problem. I
> hope you can help me.
>
> Regards,
>
> Pearl Philip
> Graduate Student
> Department of Chemical Engineering
> University of Washington, Seattle
>
>
>
>
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