Thanks Noel. I have performed a local installation and set the following environmental variables:
export PYTHONPATH=/home/prosciens/openbabel/lib/python2.6/site-packages:$PYTHONPATH export LD_LIBRARY_PATH=/home/prosciens/openbabel/lib:$LD_LIBRARY_PATH export BABEL_DATADIR=/home/prosciens/openbabel/share/openbabel/2.3.90 export BABEL_LIBDIR=/home/prosciens/openbabel/lib/openbabel/2.3.90 However, I obtain the same error when I run python dockedpose.py or python calcrmsd.py Should I also have installed Python locally beforehand? Best regards, Miro On 09/14/2011 10:29 AM, Noel O'Boyle wrote: > I would guess that you are having conflicts between several different > versions of Open Babel or the Python bindings on your computer. I > recommend you install both Open Babel and its bindings locally, set > the appropriate environment variables (e.g. LD_LIBRARY_PATH, > PYTHONPATH and so forth, and try again). > > - Noel > > On 13 September 2011 20:24, Miro Moman<miromo...@gmail.com> wrote: >> I have compiled the latest development version of OpenBabel with python >> bindings (Swig 2.0.0 and Eigen2). However, when I try to run the python >> script from https://gist.github.com/974477, I get the following error: >> >> python dockedpose.py >> Traceback (most recent call last): >> File "dockedpose.py", line 2, in >> import pybel >> File "/usr/local/lib/python2.6/dist-packages/pybel.py", line 16, in >> import openbabel as ob >> File "/usr/local/lib/python2.6/dist-packages/openbabel.py", line 79, in >> _openbabel = swig_import_helper() >> File "/usr/local/lib/python2.6/dist-packages/openbabel.py", line 75, in >> swig_import_helper >> _mod = imp.load_module('_openbabel', fp, pathname, description) >> ImportError: dynamic module does not define init function (init_openbabel) >> >> >> ------------------------------------------------------------------------------ >> BlackBerry® DevCon Americas, Oct. 18-20, San Francisco, CA >> Learn about the latest advances in developing for the >> BlackBerry® mobile platform with sessions, labs& more. >> See new tools and technologies. Register for BlackBerry® DevCon today! >> http://p.sf.net/sfu/rim-devcon-copy1 >> _______________________________________________ >> OpenBabel-discuss mailing list >> OpenBabel-discuss@lists.sourceforge.net >> https://lists.sourceforge.net/lists/listinfo/openbabel-discuss >> ------------------------------------------------------------------------------ BlackBerry® DevCon Americas, Oct. 18-20, San Francisco, CA Learn about the latest advances in developing for the BlackBerry® mobile platform with sessions, labs & more. See new tools and technologies. Register for BlackBerry® DevCon today! http://p.sf.net/sfu/rim-devcon-copy1 _______________________________________________ OpenBabel-discuss mailing list OpenBabel-discuss@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/openbabel-discuss
