Is there a way (like obabel -L svg) to get the GENOPTIONS? I am
struggling to get the -s "<substring> <color>" section to transfer
programmatically.
I've tried a lot of variants, the current one being:
self.obconv.add_option("s #{substructure}
red",OpenBabel::OBConversion::INOPTIONS)
The goal for this option is to color the substructure red.
On Tue, Aug 7, 2012 at 8:12 PM, Geoff Hutchison
<ge...@geoffhutchison.net> wrote:
>> characters to complete the translation of the command line argument
>> for what I am trying to do:
>>
>> obabel benzodiazepine.sdf.gz -O out.svg --filter "title=3016" -s
>> "c1ccc2c(c1)C(=NCCN2)c3ccccc3 red" -xu -d
>
> Keep in mind that if you're doing it programmatically, you don't use the 'x'
> part of the flag. So that '-xu' is just "u" for your OUTOPTIONS ruby script.
>
> Hope that helps,
> -Geoff
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