On 4 December 2012 09:16, mpillong <max.pill...@pharma.ethz.ch> wrote:
> Hmmm, sorry about that, I was using the < raw > Tag here ... but here's the
> original text.
>
> Hey everyone,
>
> I am currently running OpenBabel on a MacOSX 10.6.8 in Eclipse with Java.
> Recently, I encountered the following exception during using the WriteFile()
> Method in OBConversion:
>
> 'Invalid memory access of location 0xfffffffb25991558 rip=0x7fff888cb683'
>
>
> I have used the same method to write molecules before, the code looks like
> this:
>
> public static void writeOBMolecule(OBMol mol, String output, String format){
> OBConversion obc=new OBConversion();
> obc.SetInAndOutFormats(format, format);
> obc.WriteFile(mol, output);
> }
You have forgotten to check the return value of SetInAndOutFormats and
also to close the output file (not a problem unless you write to it a
second time). Actually here you should just use SetOutFormat as
follows:
bool success = obc.SetOutFormat(format);
if (success) {
obc.WriteFile(mol, output)
obc.CloseOutFile()
}
else
{//handle exception}
>
> I have tried multiple *.pdb files, the same error occurs every time
> (although the location does change every time). Any thoughts on this?
>
> Thanks in advance!
>
> Max
>
>
>
> --
> View this message in context:
> http://forums.openbabel.org/Invalid-memory-access-during-OBConversion-WriteFile-tp4655729p4655731.html
> Sent from the General discussion mailing list archive at Nabble.com.
>
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