Hi,
IIRC, I got the same error (i.e. tr1/memory header not found) once when I
tried to compile with the c++11 standard. Does clang use c++11 as default
standard on OSX10.9?
Tim
On Thu, Oct 31, 2013 at 4:18 PM, Hans De Winter <h...@silicos-it.com> wrote:
> Geoff,
>
> even the master gives me the same issue:
>
> Here is the output from the cmake .. command:
>
> hans$ export EIGEN=/usr/local/src/eigen-eigen-b23437e61a07
> hans$ cmake -DCMAKE_INSTALL_PREFIX=/usr/local/openbabel
> -DEIGEN2_INCLUDE_DIR=$EIGEN ..
> -- Using included inchi library.
> -- Found LibXml2: /usr/lib/libxml2.dylib (found version "2.9.0")
> -- Found ZLIB: /usr/lib/libz.dylib (found version "1.2.5")
> -- Could NOT find wxWidgets (missing: wxWidgets_FOUND)
> -- Looking for conio.h
> -- Looking for conio.h - not found
> -- Looking for sys/time.h
> -- Looking for sys/time.h - found
> -- Looking for time.h
> -- Looking for time.h - found
> -- Looking for strings.h
> -- Looking for strings.h - found
> -- Looking for rpc/xdr.h
> -- Looking for rpc/xdr.h - not found
> -- Looking for regex.h
> -- Looking for regex.h - found
> -- Looking for C++ include sstream
> -- Looking for C++ include sstream - found
> -- Looking for rint
> -- Looking for rint - found
> -- Looking for snprintf
> -- Looking for snprintf - found
> -- Looking for sranddev
> -- Looking for sranddev - found
> -- Looking for strcasecmp
> -- Looking for strcasecmp - found
> -- Looking for strncasecmp
> -- Looking for strncasecmp - found
> -- Looking for dlopen in dl
> -- Looking for dlopen in dl - found
> -- Looking for sys/types.h
> -- Looking for sys/types.h - found
> -- Looking for stdint.h
> -- Looking for stdint.h - found
> -- Looking for stddef.h
> -- Looking for stddef.h - found
> -- Check size of clock_t
> -- Check size of clock_t - done
> -- Performing Test SCANDIR_NEEDS_CONST
> -- Performing Test SCANDIR_NEEDS_CONST - Failed
> -- Could NOT find Eigen3 (missing: EIGEN3_INCLUDE_DIR EIGEN3_VERSION_OK)
> (Required is at least version "2.91.0")
> -- Found PkgConfig: /usr/local/bin/pkg-config (found version "0.28")
> -- checking for module 'cairo'
> -- package 'cairo' not found
> -- Found Cairo: /usr/local/lib/libcairo.dylib
> -- Cairo found. PNG output will be supported.
> -- Looking for getopt
> -- Looking for getopt - found
> -- GUI will not be built
> CMake Warning (dev) at test/CMakeLists.txt:210 (include):
> Syntax Warning in cmake code at
>
> /usr/local/src/openbabel/cmake/modules/UsePythonTest.cmake:54:14
>
> Argument not separated from preceding token by whitespace.
> This warning is for project developers. Use -Wno-dev to suppress it.
>
> CMake Warning (dev) at test/CMakeLists.txt:210 (include):
> Syntax Warning in cmake code at
>
> /usr/local/src/openbabel/cmake/modules/UsePythonTest.cmake:54:31
>
> Argument not separated from preceding token by whitespace.
> This warning is for project developers. Use -Wno-dev to suppress it.
>
> CMake Warning (dev) at test/CMakeLists.txt:210 (include):
> Syntax Warning in cmake code at
>
> /usr/local/src/openbabel/cmake/modules/UsePythonTest.cmake:57:25
>
> Argument not separated from preceding token by whitespace.
> This warning is for project developers. Use -Wno-dev to suppress it.
>
> CMake Warning (dev) at test/CMakeLists.txt:210 (include):
> Syntax Warning in cmake code at
>
> /usr/local/src/openbabel/cmake/modules/UsePythonTest.cmake:57:39
>
> Argument not separated from preceding token by whitespace.
> This warning is for project developers. Use -Wno-dev to suppress it.
>
> -- Found PythonInterp: /usr/bin/python (found version "2.7.5")
> -- Configuring done
> -- Generating done
> -- Build files have been written to: /usr/local/src/openbabel/build
>
> and the output from the subsequent make command:
>
> hans$ make
> Scanning dependencies of target openbabel
> [ 1%] Building CXX object src/CMakeFiles/openbabel.dir/alias.o
> In file included from /usr/local/src/openbabel/src/alias.cpp:17:
> In file included from
> /usr/local/src/openbabel/include/openbabel/alias.h:19:
> /usr/local/src/openbabel/include/openbabel/shared_ptr.h:25:14: fatal
> error: 'tr1/memory' file not found
> #include <tr1/memory>
> ^
> 1 error generated.
> make[2]: *** [src/CMakeFiles/openbabel.dir/alias.o] Error 1
> make[1]: *** [src/CMakeFiles/openbabel.dir/all] Error 2
> make: *** [all] Error 2
>
> Thx,
> Hans
>
> On 31 Oct 2013, at 15:51, Geoffrey Hutchison <geoff.hutchi...@gmail.com>
> wrote:
>
> I'd recommend trying Git master. I'm intending to make a 2.3.3 stable
> release at some point, so I will try to track down the problem.
>
> But as I said, I know that the latest development code compiles cleanly.
>
> -Geoff
>
>
>
>
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