Dear All,
Currently we are developing a Java application in Cent OS, and facing
difficulty to integrate Openbabel API:
I have attached Sample Test Code, Errors received and System library file
details here by.
Appreciate if someone can guide us to overcome this issue. If possible, Could
someone provide me a working bundle of '.so' files, compiled for CentOS?
Sample Test Code
package test.openbabelimpl;
import org.openbabel.*;
public class Test {
public static void main(String[] args) {
System.loadLibrary("openbabel_java");
OBConversion conv = new OBConversion();
OBMol mol = new OBMol();
.............
.............
Error received while compiling the Sample Test code
Exception in thread "main" java.lang.UnsatisfiedLinkError:
/root/libope2/libopenbabel_java.so: /root/libope2/libopenbabel_java.so:
undefined symbol: _ZTVN9OpenBabel22OBEnergyConformerScoreE
at java.lang.ClassLoader$NativeLibrary.load(Native Method)
at java.lang.ClassLoader.loadLibrary0(ClassLoader.java:1750)
at java.lang.ClassLoader.loadLibrary(ClassLoader.java:1675)
at java.lang.Runtime.loadLibrary0(Runtime.java:840)
at java.lang.System.loadLibrary(System.java:1047)
at org.orion.plancore.util.openbabelimpl.Test.main(Test.java:10)
System library Files available in folder /root/libope2/
-rwxr-xr-x. 1 root root 3.1M Sep 17 20:24 libinchi.so
-rwxr-xr-x. 1 root root 3.1M Sep 17 20:24 libinchi.so.0
-rwxr-xr-x. 1 root root 3.1M Sep 17 20:24 libinchi.so.0.4.1
-rwxr-xr-x. 1 root root 6.2M Sep 17 20:24 libopenbabel_java.so
-rwxr-xr-x. 1 root root 20M Sep 17 20:24 libopenbabel.so
-rwxr-xr-x. 1 root root 20M Sep 17 20:24 libopenbabel.so.4
-rwxr-xr-x. 1 root root 20M Sep 17 20:24 libopenbabel.so.4.0.2
Note
We have compiled these system files in CentOS from the openbabel source.
Thanks and regards
Rajesh Hariharan
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