Hi Sanjan,

Since you've already have (Ana)conda, the easiest solution whould be
installing it via conda:

"conda install -c openbabel openbabel"

----
Pozdrawiam,  |  Best regards,
Maciek Wójcikowski
mac...@wojcikowski.pl

2016-11-30 3:46 GMT+01:00 tpsanjan <tpsan...@gmail.com>:

> Hi,
>
> I have been trying install python bindings for openbabel 2.4.1 on
> Ubunut16.04 with python 3.5.2 (installed via Anaconda) but haven't been
> able
> to get it working. Here's what I have tried so far:
>
> Based on David Hall's post in this thread:
>
> $ git clone https://github.com/openbabel/openbabel.git
> $ cd openbabel
> $ mkdir build
> $ cd build
> $ cmake .. -DPYTHON_EXECUTABLE=/usr/bin/python3 -DPYTHON_BINDINGS=ON
> -DRUN_SWIG=ON
> $ grep '^PYTHON' CMakeCache.txt
>
> And then followed the steps given on openbabel docs
> (https://open-babel.readthedocs.io/en/latest/Installation/install.html#
> compile-bindings)
>
> $ cmake ../openbabel-2.3.2 -DPYTHON_BINDINGS=ON
> $ make
> # make install
> $ export PYTHONPATH=/usr/local/lib:$PYTHONPATH
>
> All commands seemed to run smoothly (python3-dev is installed). But when I
> use python shell through terminal:
>
> sgupta78@sgupta78:~$ python
> imPython 3.5.2 |Anaconda 4.1.1 (64-bit)| (default, Jul  2 2016, 17:53:06)
> [GCC 4.4.7 20120313 (Red Hat 4.4.7-1)] on linux
> Type "help", "copyright", "credits" or "license" for more information.
> >>> import openbabel
> >>> mol = openbabel.OBMol()
> Traceback (most recent call last):
>   File "<stdin>", line 1, in <module>
> AttributeError: module 'openbabel' has no attribute 'OBMol'
>
> import openbabel was successful *but none of the functions in openbabel
> module are being recognized*. As shown above it's raising AttributeError.
> Is
> there something that I missed during installation steps shown above?
>
> Secondly, when I ran a simple script [just to test OBMol() ] stored in  a
> sub-folder of home directory, *even the import openbabel failed*. This
> possibly means that the environment variables haven't been set. I assumed
> that cmake and export steps above possibly take care of it.
>
> Any help would be appreciated.
>
> Thanks,
> Sanjan
>
>
>
>
>
>
>
> --
> View this message in context: http://forums.openbabel.org/
> OpenBabel-for-Python-3-tp4659432p4659622.html
> Sent from the General discussion mailing list archive at Nabble.com.
>
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