The obminimize program does not have all the features of the obabel command. You can naturally convert a PDB file to SDF:
obabel file.pdb -O file.sdf > I tried -osdf filename.sdf and it didn't work. How can I get it in sdf format? > Or how can I convert multimolecule pdb file to an sdf file? You can also use the --minimize flag with obabel to minimize molecules. http://open-babel.readthedocs.io/en/latest/Command-line_tools/babel.html?highlight=minimize#forcefield-energy-and-minimization Hope that helps, -Geoff ------------------------------------------------------------------------------ Check out the vibrant tech community on one of the world's most engaging tech sites, Slashdot.org! http://sdm.link/slashdot _______________________________________________ OpenBabel-discuss mailing list OpenBabel-discuss@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/openbabel-discuss
