Bugs item #845971, was opened at 2003-11-20 11:38
Message generated for change (Comment added) made by brechin
You can respond by visiting:
https://sourceforge.net/tracker/?func=detail&atid=109368&aid=845971&group_id=9368
Category: Packages
Group: 2.4
Status: Open
Resolution: None
Priority: 8
Submitted By: Jason Brechin (brechin)
Assigned to: Jeff Squyres (jsquyres)
Summary: LAM installed after initial install fails tests
Initial Comment:
I installed the cluster w/o LAM. MPICH was default
MPI. I installed LAM, and selected it to be the default
MPI. Now, when I run the tests, I get a failure. It
seems like it's looking for GM. Unfortunately, VMWare
doesn't have a virtual GM device yet ;)
Here are lamtest.out and .err:
[EMAIL PROTECTED] lam]# cat lamtest.out
Running LAM/MPI test
--> MPI C bindings test:
TEST FAILED!
Commands: mpicc cpi.c -o lam-cpi && mpirun C lam-cpi
&& lamclean
LAM 7.0/MPI 2 C++/ROMIO - Indiana University
[EMAIL PROTECTED] lam]# cat lamtest.err
lamboot: error while loading shared libraries: libgm.so.0:
cannot open shared object file: No such file or directory
/usr/bin/ld: cannot find -lgm
collect2: ld returned 1 exit status
mpicc: No such file or directory
------------------------------------------------------
-----------------------
It seems that there is no lamd running on the host
oscarnode1.ncsa.uiuc.edu.
This indicates that the LAM/MPI runtime environment is
not operating.
The LAM/MPI runtime environment is necessary for
the "lamhalt" command.
Please run the "lamboot" command the start the
LAM/MPI runtime
environment. See the LAM/MPI documentation for how
to invoke
"lamboot" across multiple machines.
------------------------------------------------------
-----------------------
----------------------------------------------------------------------
>Comment By: Jason Brechin (brechin)
Date: 2003-11-20 14:09
Message:
Logged In: YES
user_id=274641
Not a VMWare problem, per se, but it is due to a rather small
disk size I've allowed it. At that point, is it not doing
something? I would imagine it should either totally fail, or at
least leave the server and clients in a working state.
----------------------------------------------------------------------
Comment By: John (muglerj)
Date: 2003-11-20 14:03
Message:
Logged In: YES
user_id=505737
Looks like the rpm -Uvh command failed on the image. Here's
the actual error message i dug out of the blob:
'installing package lam-with-gm-oscar-7.0-2 needs 8MB
on the / filesystem'
Is this a vmware problem?
I tried a response via normal mail earlier...sourceforge
would not let me log in until afternoon.
----------------------------------------------------------------------
Comment By: Jason Brechin (brechin)
Date: 2003-11-20 11:44
Message:
Logged In: YES
user_id=274641
Upon futher investigation, installed and should_be_installed
were not set properly after the whole ordeal...
I guess it didn't install properly?
As a side note... I wish Neil would have fixed
those "uninitialized" errors.
Xlib: extension "GLX" missing on display "localhost:10.0".
Xlib: extension "GLX" missing on display "localhost:10.0".
--> PLEASE WAIT! Bring up the Configurator...
==============================================
===============================
== Running step 2 of the OSCAR wizard: Configure selected
OSCAR packages
==============================================
===============================
--> About to
run /opt/oscar/packages/kernel_picker/scripts/pre_configure
for kernel_picker
warning: /tftpboot/rpm/redhat-release-9-3.i386.rpm: V3 DSA
signature: NOKEY, key ID db42a60e
[OSCAR::PackageBest :: Line 407] Reading package directory
[OSCAR::PackageBest :: Line 419] Reading cache file.
[OSCAR::PackageBest :: Line 432] Comparing cache to
directory.
[OSCAR::PackageBest :: Line 457] Writing new cache file.
62750 blocks
65913 blocks
--> About to
run /opt/oscar/packages/switcher/scripts/pre_configure for
switcher
--> About to
run /opt/oscar/packages/switcher/scripts/post_configure for
switcher
Setting default for tag mpi ("lam-7.0")
Attribute successfully set; new attribute setting will be
effective for
future shells
--> Step 2: Completed successfully
executing:/opt/c3-4/cexec --pipe c3cmd-filter hostname
==============================================
===============================
== Running OSCAR package install
==============================================
===============================
Use of uninitialized value in pattern match (m//)
at /usr/lib/perl5/site_perl/oda.pm line 2930.
Use of uninitialized value in pattern match (m//)
at /usr/lib/perl5/site_perl/oda.pm line 2930.
Use of uninitialized value in pattern match (m//)
at /usr/lib/perl5/site_perl/oda.pm line 2930.
Use of uninitialized value in pattern match (m//)
at /usr/lib/perl5/site_perl/oda.pm line 2930.
--> Running install on clients
RPMS that need to be installed:
- /tftpboot/rpm/libaio-devel-0.3.93-4.i386.rpm
- /tftpboot/rpm/libaio-0.3.93-4.i386.rpm
- /opt/oscar/packages/lam/RPMS/lam-with-gm-oscar-module-
7.0-2.i586.rpm
- /opt/oscar/packages/lam/RPMS/lam-with-gm-oscar-7.0-
2.i586.rpm
- /opt/oscar/packages/lam/RPMS/lam-oscar-module-7.0-
2.i586.rpm
- /opt/oscar/packages/lam/RPMS/lam-oscar-7.0-2.i586.rpm
RPMS that will be installed:
- /tftpboot/rpm/libaio-devel-0.3.93-4.i386.rpm
- /opt/oscar/packages/lam/RPMS/lam-with-gm-oscar-module-
7.0-2.i586.rpm
- /opt/oscar/packages/lam/RPMS/lam-oscar-module-7.0-
2.i586.rpm
- /opt/oscar/packages/lam/RPMS/lam-with-gm-oscar-7.0-
2.i586.rpm
- /tftpboot/rpm/libaio-0.3.93-4.i386.rpm
- /opt/oscar/packages/lam/RPMS/lam-oscar-7.0-2.i586.rpm
executing:/opt/c3-4/cexec --pipe c3cmd-filter mkdir -
p /tmp/tmpinstallrpm/
executing:/opt/c3-4/cpush /tftpboot/rpm/libaio-devel-0.3.93-
4.i386.rpm /tmp/tmpinstallrpm/
executing:/opt/c3-
4/cpush /opt/oscar/packages/lam/RPMS/lam-with-gm-oscar-
module-7.0-2.i586.rpm /tmp/tmpinstallrpm/
executing:/opt/c3-
4/cpush /opt/oscar/packages/lam/RPMS/lam-oscar-module-
7.0-2.i586.rpm /tmp/tmpinstallrpm/
executing:/opt/c3-
4/cpush /opt/oscar/packages/lam/RPMS/lam-with-gm-oscar-
7.0-2.i586.rpm /tmp/tmpinstallrpm/
executing:/opt/c3-4/cpush /tftpboot/rpm/libaio-0.3.93-
4.i386.rpm /tmp/tmpinstallrpm/
executing:/opt/c3-
4/cpush /opt/oscar/packages/lam/RPMS/lam-oscar-7.0-
2.i586.rpm /tmp/tmpinstallrpm/
executing:/opt/c3-4/cexec --pipe c3cmd-filter rpm -
Uvh /tmp/tmpinstallrpm/libaio-devel-0.3.93-
4.i386.rpm /tmp/tmpinstallrpm/lam-with-gm-oscar-module-7.0-
2.i586.rpm /tmp/tmpinstallrpm/lam-oscar-module-7.0-
2.i586.rpm /tmp/tmpinstallrpm/lam-with-gm-oscar-7.0-
2.i586.rpm /tmp/tmpinstallrpm/libaio-0.3.93-
4.i386.rpm /tmp/tmpinstallrpm/lam-oscar-7.0-2.i586.rpm
executing:/opt/c3-4/cexec --pipe c3cmd-filter rm -
rf /tmp/tmpinstallrpm/
finished with rpms
--> Completed install on clients
--> Starting run_install_server
RPMS that need to be installed:
- /tftpboot/rpm/libaio-devel-0.3.93-4.i386.rpm
- /tftpboot/rpm/libaio-0.3.93-4.i386.rpm
- /opt/oscar/packages/lam/RPMS/lam-with-gm-oscar-module-
7.0-2.i586.rpm
- /opt/oscar/packages/lam/RPMS/lam-with-gm-oscar-7.0-
2.i586.rpm
- /opt/oscar/packages/lam/RPMS/lam-oscar-module-7.0-
2.i586.rpm
- /opt/oscar/packages/lam/RPMS/lam-oscar-7.0-2.i586.rpm
RPMS that will be installed:
- /tftpboot/rpm/libaio-devel-0.3.93-4.i386.rpm
- /opt/oscar/packages/lam/RPMS/lam-with-gm-oscar-module-
7.0-2.i586.rpm
- /opt/oscar/packages/lam/RPMS/lam-oscar-module-7.0-
2.i586.rpm
- /opt/oscar/packages/lam/RPMS/lam-with-gm-oscar-7.0-
2.i586.rpm
- /tftpboot/rpm/libaio-0.3.93-4.i386.rpm
- /opt/oscar/packages/lam/RPMS/lam-oscar-7.0-2.i586.rpm
executing:rpm -Uvh /tftpboot/rpm/libaio-devel-0.3.93-
4.i386.rpm /opt/oscar/packages/lam/RPMS/lam-with-gm-
oscar-module-7.0-
2.i586.rpm /opt/oscar/packages/lam/RPMS/lam-oscar-module-
7.0-2.i586.rpm /opt/oscar/packages/lam/RPMS/lam-with-gm-
oscar-7.0-2.i586.rpm /tftpboot/rpm/libaio-0.3.93-
4.i386.rpm /opt/oscar/packages/lam/RPMS/lam-oscar-7.0-
2.i586.rpm
finished with rpms
executed post_server_install phase on server
executed post_clients phase on server
--> Completed run_install_server
--> Starting run_install_image.
RPMS that need to be installed:
- /tftpboot/rpm/libaio-devel-0.3.93-4.i386.rpm
- /tftpboot/rpm/libaio-0.3.93-4.i386.rpm
- /opt/oscar/packages/lam/RPMS/lam-with-gm-oscar-module-
7.0-2.i586.rpm
- /opt/oscar/packages/lam/RPMS/lam-with-gm-oscar-7.0-
2.i586.rpm
- /opt/oscar/packages/lam/RPMS/lam-oscar-module-7.0-
2.i586.rpm
- /opt/oscar/packages/lam/RPMS/lam-oscar-7.0-2.i586.rpm
RPMS that will be installed:
- /tftpboot/rpm/libaio-devel-0.3.93-4.i386.rpm
- /opt/oscar/packages/lam/RPMS/lam-with-gm-oscar-module-
7.0-2.i586.rpm
- /opt/oscar/packages/lam/RPMS/lam-oscar-module-7.0-
2.i586.rpm
- /opt/oscar/packages/lam/RPMS/lam-with-gm-oscar-7.0-
2.i586.rpm
- /tftpboot/rpm/libaio-0.3.93-4.i386.rpm
- /opt/oscar/packages/lam/RPMS/lam-oscar-7.0-2.i586.rpm
Use of uninitialized value in concatenation (.) or string
at /opt/oscar/lib/OSCAR/PackageInUn.pm line 619.
executing:/bin/mkdir -
p /var/lib/systemimager/images/oscarimage/tmp/tmpinstallrpm/
executing:/bin/cp /tftpboot/rpm/libaio-devel-0.3.93-
4.i386.rpm /opt/oscar/packages/lam/RPMS/lam-with-gm-
oscar-module-7.0-
2.i586.rpm /opt/oscar/packages/lam/RPMS/lam-oscar-module-
7.0-2.i586.rpm /opt/oscar/packages/lam/RPMS/lam-with-gm-
oscar-7.0-2.i586.rpm /tftpboot/rpm/libaio-0.3.93-
4.i386.rpm /opt/oscar/packages/lam/RPMS/lam-oscar-7.0-
2.i586.rpm /var/lib/systemimager/images/oscarimage/tmp/tmpi
nstallrpm/
executing:/bin/rpm -Uvh --
root /var/lib/systemimager/images/oscarimage /var/lib/syste
mimager/images/oscarimage/tmp/tmpinstallrpm/libaio-devel-
0.3.93-
4.i386.rpm /var/lib/systemimager/images/oscarimage/tmp/tmpi
nstallrpm/lam-with-gm-oscar-module-7.0-
2.i586.rpm /var/lib/systemimager/images/oscarimage/tmp/tmpi
nstallrpm/lam-oscar-module-7.0-
2.i586.rpm /var/lib/systemimager/images/oscarimage/tmp/tmpi
nstallrpm/lam-with-gm-oscar-7.0-
2.i586.rpm /var/lib/systemimager/images/oscarimage/tmp/tmpi
nstallrpm/libaio-0.3.93-
4.i386.rpm /var/lib/systemimager/images/oscarimage/tmp/tmpi
nstallrpm/lam-oscar-7.0-2.i586.rpm
Error executing:/bin/rpm -Uvh --
root /var/lib/systemimager/images/oscarimage /var/lib/syste
mimager/images/oscarimage/tmp/tmpinstallrpm/libaio-devel-
0.3.93-
4.i386.rpm /var/lib/systemimager/images/oscarimage/tmp/tmpi
nstallrpm/lam-with-gm-oscar-module-7.0-
2.i586.rpm /var/lib/systemimager/images/oscarimage/tmp/tmpi
nstallrpm/lam-oscar-module-7.0-
2.i586.rpm /var/lib/systemimager/images/oscarimage/tmp/tmpi
nstallrpm/lam-with-gm-oscar-7.0-
2.i586.rpm /var/lib/systemimager/images/oscarimage/tmp/tmpi
nstallrpm/libaio-0.3.93-
4.i386.rpm /var/lib/systemimager/images/oscarimage/tmp/tmpi
nstallrpm/lam-oscar-7.0-2.i586.rpm
:warning: /var/lib/systemimager/images/oscarimage/tmp/tmpin
stallrpm/libaio-devel-0.3.93-4.i386.rpm: V3 DSA signature:
NOKEY, key ID db42a60e
Preparing...
#########################################
#########
installing package lam-with-gm-oscar-7.0-2 needs 8MB
on the / filesystem
Error: cannot install to the image:1
Error: package (lam) failed to install.
Use of uninitialized value in pattern match (m//)
at /usr/lib/perl5/site_perl/oda.pm line 2930.
--> About to
run /opt/oscar/packages/oda/scripts/post_install for oda
generating the /etc/odaserver file on all oscar clients
. /etc/profile.d/c3.sh && cexec 'echo oscar_server
> /etc/odaserver'
************************* oscar_cluster
*************************
--------- oscarnode1.ncsa.uiuc.edu---------
executed post_install phase on server for package: (oda)
Use of uninitialized value in pattern match (m//)
at /usr/lib/perl5/site_perl/oda.pm line 2930.
--> About to
run /opt/oscar/packages/switcher/scripts/post_install for
switcher
Setting default for tag mpi ("lam-7.0")
Attribute successfully set; new attribute setting will be
effective for
future shells
building file list ... done
switcher.ini
wrote 239 bytes read 42 bytes 80.29 bytes/sec
total size is 189 speedup is 0.67
executed post_install phase on server for package: (switcher)
Use of uninitialized value in pattern match (m//)
at /usr/lib/perl5/site_perl/oda.pm line 2930.
executed post_install phase on server for package: (sis)
Use of uninitialized value in pattern match (m//)
at /usr/lib/perl5/site_perl/oda.pm line 2930.
executed post_install phase on server for package: (pvm)
Use of uninitialized value in pattern match (m//)
at /usr/lib/perl5/site_perl/oda.pm line 2930.
--> About to
run /opt/oscar/packages/pfilter/scripts/post_install for pfilter
(re)starting the pfilter firewall service on this server
/etc/init.d/pfilter restart
Restarting pfilter: [ OK ]
pushing out the clients pfilter firewall configuration file
. /etc/profile.d/c3.sh &&
cpush /etc/pfilter.conf.clients /etc/pfilter.conf
building file list ... done
wrote 59 bytes read 20 bytes 22.57 bytes/sec
total size is 867 speedup is 10.97
(re)starting the pfilter firewall service on the clients
. /etc/profile.d/c3.sh && cexec /etc/init.d/pfilter restart
************************* oscar_cluster
*************************
--------- oscarnode1.ncsa.uiuc.edu---------
Restarting pfilter:[ OK ]
executed post_install phase on server for package: (pfilter)
Use of uninitialized value in pattern match (m//)
at /usr/lib/perl5/site_perl/oda.pm line 2930.
executed post_install phase on server for package: (perl-Qt)
Use of uninitialized value in pattern match (m//)
at /usr/lib/perl5/site_perl/oda.pm line 2930.
--> About to
run /opt/oscar/packages/pbs/scripts/post_install for pbs
PBS mom config file updated with clienthost: vm-
rh90.ncsa.uiuc.edu
Pushing config file to clients...
building file list ... done
config
wrote 79 bytes read 42 bytes 34.57 bytes/sec
total size is 123 speedup is 1.02
Sending SIGHUP to all moms...
************************* oscar_cluster
*************************
--------- oscarnode1.ncsa.uiuc.edu---------
Shutting down PBS Server: [ OK ]
Starting PBS Server: [ OK ]
Updating pbs_server nodes
set node oscarnode1.ncsa.uiuc.edu np = 1
Creating pbs workq queue...
Max open servers: 4
set queue workq resources_max.ncpus = 1
set queue workq resources_max.nodect = 1
set queue workq resources_available.nodect = 1
set server resources_available.ncpus = 1
set server resources_available.nodect = 1
set server resources_available.nodes = 1
set server resources_max.ncpus = 1
set server resources_max.nodes = 1
set server scheduler_iteration = 60
Shutting down MAUI Scheduler: [ OK ]
Starting MAUI Scheduler: [ OK ]
executed post_install phase on server for package: (pbs)
Use of uninitialized value in pattern match (m//)
at /usr/lib/perl5/site_perl/oda.pm line 2930.
--> About to
run /opt/oscar/packages/opium/scripts/post_install for opium
building file list ... done
gshadow
wrote 80 bytes read 42 bytes 34.86 bytes/sec
total size is 474 speedup is 3.89
building file list ... done
wrote 51 bytes read 20 bytes 28.40 bytes/sec
total size is 189 speedup is 2.66
building file list ... done
passwd
wrote 416 bytes read 54 bytes 188.00 bytes/sec
total size is 1505 speedup is 3.20
building file list ... done
group
wrote 383 bytes read 42 bytes 170.00 bytes/sec
total size is 578 speedup is 1.36
building file list ... done
shadow
wrote 336 bytes read 48 bytes 153.60 bytes/sec
total size is 932 speedup is 2.43
executed post_install phase on server for package: (opium)
Use of uninitialized value in pattern match (m//)
at /usr/lib/perl5/site_perl/oda.pm line 2930.
--> About to
run /opt/oscar/packages/ntpconfig/scripts/post_install for
ntpconfig
************************* oscar_cluster
*************************
--------- oscarnode1.ncsa.uiuc.edu---------
Shutting down ntpd: [ OK ]
ntpd: Synchronizing with time server: [ OK ]
Starting ntpd: [ OK ]
executed post_install phase on server for package:
(ntpconfig)
Use of uninitialized value in pattern match (m//)
at /usr/lib/perl5/site_perl/oda.pm line 2930.
executed post_install phase on server for package:
(networking)
Use of uninitialized value in pattern match (m//)
at /usr/lib/perl5/site_perl/oda.pm line 2930.
executed post_install phase on server for package: (mpich)
Use of uninitialized value in pattern match (m//)
at /usr/lib/perl5/site_perl/oda.pm line 2930.
executed post_install phase on server for package: (maui)
Use of uninitialized value in pattern match (m//)
at /usr/lib/perl5/site_perl/oda.pm line 2930.
--> About to
run /opt/oscar/packages/loghost/scripts/post_install for
loghost
************************* oscar_cluster
*************************
--------- oscarnode1.ncsa.uiuc.edu---------
oscar_loghost already set
executed post_install phase on server for package: (loghost)
Use of uninitialized value in pattern match (m//)
at /usr/lib/perl5/site_perl/oda.pm line 2930.
Use of uninitialized value in pattern match (m//)
at /usr/lib/perl5/site_perl/oda.pm line 2930.
executed post_install phase on server for package:
(kernel_picker)
Use of uninitialized value in pattern match (m//)
at /usr/lib/perl5/site_perl/oda.pm line 2930.
executed post_install phase on server for package: (hdf5)
Use of uninitialized value in pattern match (m//)
at /usr/lib/perl5/site_perl/oda.pm line 2930.
executed post_install phase on server for package: (disable-
services)
Use of uninitialized value in pattern match (m//)
at /usr/lib/perl5/site_perl/oda.pm line 2930.
executed post_install phase on server for package: (c3)
Use of uninitialized value in pattern match (m//)
at /usr/lib/perl5/site_perl/oda.pm line 2930.
executed post_install phase on server for package: (base)
Use of uninitialized value in pattern match (m//)
at /usr/lib/perl5/site_perl/oda.pm line 2930.
----------------------------------------------------------------------
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