Bugs item #845971, was opened at 2003-11-20 12:38
Message generated for change (Comment added) made by muglerj
You can respond by visiting:
https://sourceforge.net/tracker/?func=detail&atid=109368&aid=845971&group_id=9368
Category: Packages
Group: 2.4
Status: Open
Resolution: None
Priority: 8
Submitted By: Jason Brechin (brechin)
Assigned to: Jeff Squyres (jsquyres)
Summary: LAM installed after initial install fails tests
Initial Comment:
I installed the cluster w/o LAM. MPICH was default
MPI. I installed LAM, and selected it to be the default
MPI. Now, when I run the tests, I get a failure. It
seems like it's looking for GM. Unfortunately, VMWare
doesn't have a virtual GM device yet ;)
Here are lamtest.out and .err:
[EMAIL PROTECTED] lam]# cat lamtest.out
Running LAM/MPI test
--> MPI C bindings test:
TEST FAILED!
Commands: mpicc cpi.c -o lam-cpi && mpirun C lam-cpi
&& lamclean
LAM 7.0/MPI 2 C++/ROMIO - Indiana University
[EMAIL PROTECTED] lam]# cat lamtest.err
lamboot: error while loading shared libraries: libgm.so.0:
cannot open shared object file: No such file or directory
/usr/bin/ld: cannot find -lgm
collect2: ld returned 1 exit status
mpicc: No such file or directory
------------------------------------------------------
-----------------------
It seems that there is no lamd running on the host
oscarnode1.ncsa.uiuc.edu.
This indicates that the LAM/MPI runtime environment is
not operating.
The LAM/MPI runtime environment is necessary for
the "lamhalt" command.
Please run the "lamboot" command the start the
LAM/MPI runtime
environment. See the LAM/MPI documentation for how
to invoke
"lamboot" across multiple machines.
------------------------------------------------------
-----------------------
----------------------------------------------------------------------
>Comment By: John (muglerj)
Date: 2003-11-20 16:57
Message:
Logged In: YES
user_id=505737
Ok, heres your current situation:
1. the install to the clients succeeded.
2. the install to the server succeeded.
3. the install to your image failed.
4. the post_install script never ran for lam.
5. the installed bit is still set to 0, and the system thinks
the package is not installed. I'm not sure about the
"to_be_installed" bit. 6. You will not be allowed to run the
uninstall scripts from the GUI.
If we fail on an install action (we try to detect
everything), we immediately fail gracefully and print a
decent debug statement. There is no attempt at system
cleanup, currently.
To fix this, we need to go to a system that can operate on
the different chunks of the system, retain enough
information to know what is installed and where, and
automatically do the right thing. This will require more
database mods, more GUI mods...basically just more of
everything.
To fix things (get lam installed) in your situation, you
have 2 options (this is after you fix the disk issue on your
VM):
1. clean the cruft out of /tmp on the image, manually run
the uninstall scripts for lam...and then retry thru the
GUI...preferred.
2. manually finish installing to the image, set the
installed bit by hand, rerun all packages post_install
scripts by hand.
----------------------------------------------------------------------
Comment By: Jason Brechin (brechin)
Date: 2003-11-20 15:09
Message:
Logged In: YES
user_id=274641
Not a VMWare problem, per se, but it is due to a rather small
disk size I've allowed it. At that point, is it not doing
something? I would imagine it should either totally fail, or at
least leave the server and clients in a working state.
----------------------------------------------------------------------
Comment By: John (muglerj)
Date: 2003-11-20 15:03
Message:
Logged In: YES
user_id=505737
Looks like the rpm -Uvh command failed on the image. Here's
the actual error message i dug out of the blob:
'installing package lam-with-gm-oscar-7.0-2 needs 8MB
on the / filesystem'
Is this a vmware problem?
I tried a response via normal mail earlier...sourceforge
would not let me log in until afternoon.
----------------------------------------------------------------------
Comment By: Jason Brechin (brechin)
Date: 2003-11-20 12:44
Message:
Logged In: YES
user_id=274641
Upon futher investigation, installed and should_be_installed
were not set properly after the whole ordeal...
I guess it didn't install properly?
As a side note... I wish Neil would have fixed
those "uninitialized" errors.
Xlib: extension "GLX" missing on display "localhost:10.0".
Xlib: extension "GLX" missing on display "localhost:10.0".
--> PLEASE WAIT! Bring up the Configurator...
==============================================
===============================
== Running step 2 of the OSCAR wizard: Configure selected
OSCAR packages
==============================================
===============================
--> About to
run /opt/oscar/packages/kernel_picker/scripts/pre_configure
for kernel_picker
warning: /tftpboot/rpm/redhat-release-9-3.i386.rpm: V3 DSA
signature: NOKEY, key ID db42a60e
[OSCAR::PackageBest :: Line 407] Reading package directory
[OSCAR::PackageBest :: Line 419] Reading cache file.
[OSCAR::PackageBest :: Line 432] Comparing cache to
directory.
[OSCAR::PackageBest :: Line 457] Writing new cache file.
62750 blocks
65913 blocks
--> About to
run /opt/oscar/packages/switcher/scripts/pre_configure for
switcher
--> About to
run /opt/oscar/packages/switcher/scripts/post_configure for
switcher
Setting default for tag mpi ("lam-7.0")
Attribute successfully set; new attribute setting will be
effective for
future shells
--> Step 2: Completed successfully
executing:/opt/c3-4/cexec --pipe c3cmd-filter hostname
==============================================
===============================
== Running OSCAR package install
==============================================
===============================
Use of uninitialized value in pattern match (m//)
at /usr/lib/perl5/site_perl/oda.pm line 2930.
Use of uninitialized value in pattern match (m//)
at /usr/lib/perl5/site_perl/oda.pm line 2930.
Use of uninitialized value in pattern match (m//)
at /usr/lib/perl5/site_perl/oda.pm line 2930.
Use of uninitialized value in pattern match (m//)
at /usr/lib/perl5/site_perl/oda.pm line 2930.
--> Running install on clients
RPMS that need to be installed:
- /tftpboot/rpm/libaio-devel-0.3.93-4.i386.rpm
- /tftpboot/rpm/libaio-0.3.93-4.i386.rpm
- /opt/oscar/packages/lam/RPMS/lam-with-gm-oscar-module-
7.0-2.i586.rpm
- /opt/oscar/packages/lam/RPMS/lam-with-gm-oscar-7.0-
2.i586.rpm
- /opt/oscar/packages/lam/RPMS/lam-oscar-module-7.0-
2.i586.rpm
- /opt/oscar/packages/lam/RPMS/lam-oscar-7.0-2.i586.rpm
RPMS that will be installed:
- /tftpboot/rpm/libaio-devel-0.3.93-4.i386.rpm
- /opt/oscar/packages/lam/RPMS/lam-with-gm-oscar-module-
7.0-2.i586.rpm
- /opt/oscar/packages/lam/RPMS/lam-oscar-module-7.0-
2.i586.rpm
- /opt/oscar/packages/lam/RPMS/lam-with-gm-oscar-7.0-
2.i586.rpm
- /tftpboot/rpm/libaio-0.3.93-4.i386.rpm
- /opt/oscar/packages/lam/RPMS/lam-oscar-7.0-2.i586.rpm
executing:/opt/c3-4/cexec --pipe c3cmd-filter mkdir -
p /tmp/tmpinstallrpm/
executing:/opt/c3-4/cpush /tftpboot/rpm/libaio-devel-0.3.93-
4.i386.rpm /tmp/tmpinstallrpm/
executing:/opt/c3-
4/cpush /opt/oscar/packages/lam/RPMS/lam-with-gm-oscar-
module-7.0-2.i586.rpm /tmp/tmpinstallrpm/
executing:/opt/c3-
4/cpush /opt/oscar/packages/lam/RPMS/lam-oscar-module-
7.0-2.i586.rpm /tmp/tmpinstallrpm/
executing:/opt/c3-
4/cpush /opt/oscar/packages/lam/RPMS/lam-with-gm-oscar-
7.0-2.i586.rpm /tmp/tmpinstallrpm/
executing:/opt/c3-4/cpush /tftpboot/rpm/libaio-0.3.93-
4.i386.rpm /tmp/tmpinstallrpm/
executing:/opt/c3-
4/cpush /opt/oscar/packages/lam/RPMS/lam-oscar-7.0-
2.i586.rpm /tmp/tmpinstallrpm/
executing:/opt/c3-4/cexec --pipe c3cmd-filter rpm -
Uvh /tmp/tmpinstallrpm/libaio-devel-0.3.93-
4.i386.rpm /tmp/tmpinstallrpm/lam-with-gm-oscar-module-7.0-
2.i586.rpm /tmp/tmpinstallrpm/lam-oscar-module-7.0-
2.i586.rpm /tmp/tmpinstallrpm/lam-with-gm-oscar-7.0-
2.i586.rpm /tmp/tmpinstallrpm/libaio-0.3.93-
4.i386.rpm /tmp/tmpinstallrpm/lam-oscar-7.0-2.i586.rpm
executing:/opt/c3-4/cexec --pipe c3cmd-filter rm -
rf /tmp/tmpinstallrpm/
finished with rpms
--> Completed install on clients
--> Starting run_install_server
RPMS that need to be installed:
- /tftpboot/rpm/libaio-devel-0.3.93-4.i386.rpm
- /tftpboot/rpm/libaio-0.3.93-4.i386.rpm
- /opt/oscar/packages/lam/RPMS/lam-with-gm-oscar-module-
7.0-2.i586.rpm
- /opt/oscar/packages/lam/RPMS/lam-with-gm-oscar-7.0-
2.i586.rpm
- /opt/oscar/packages/lam/RPMS/lam-oscar-module-7.0-
2.i586.rpm
- /opt/oscar/packages/lam/RPMS/lam-oscar-7.0-2.i586.rpm
RPMS that will be installed:
- /tftpboot/rpm/libaio-devel-0.3.93-4.i386.rpm
- /opt/oscar/packages/lam/RPMS/lam-with-gm-oscar-module-
7.0-2.i586.rpm
- /opt/oscar/packages/lam/RPMS/lam-oscar-module-7.0-
2.i586.rpm
- /opt/oscar/packages/lam/RPMS/lam-with-gm-oscar-7.0-
2.i586.rpm
- /tftpboot/rpm/libaio-0.3.93-4.i386.rpm
- /opt/oscar/packages/lam/RPMS/lam-oscar-7.0-2.i586.rpm
executing:rpm -Uvh /tftpboot/rpm/libaio-devel-0.3.93-
4.i386.rpm /opt/oscar/packages/lam/RPMS/lam-with-gm-
oscar-module-7.0-
2.i586.rpm /opt/oscar/packages/lam/RPMS/lam-oscar-module-
7.0-2.i586.rpm /opt/oscar/packages/lam/RPMS/lam-with-gm-
oscar-7.0-2.i586.rpm /tftpboot/rpm/libaio-0.3.93-
4.i386.rpm /opt/oscar/packages/lam/RPMS/lam-oscar-7.0-
2.i586.rpm
finished with rpms
executed post_server_install phase on server
executed post_clients phase on server
--> Completed run_install_server
--> Starting run_install_image.
RPMS that need to be installed:
- /tftpboot/rpm/libaio-devel-0.3.93-4.i386.rpm
- /tftpboot/rpm/libaio-0.3.93-4.i386.rpm
- /opt/oscar/packages/lam/RPMS/lam-with-gm-oscar-module-
7.0-2.i586.rpm
- /opt/oscar/packages/lam/RPMS/lam-with-gm-oscar-7.0-
2.i586.rpm
- /opt/oscar/packages/lam/RPMS/lam-oscar-module-7.0-
2.i586.rpm
- /opt/oscar/packages/lam/RPMS/lam-oscar-7.0-2.i586.rpm
RPMS that will be installed:
- /tftpboot/rpm/libaio-devel-0.3.93-4.i386.rpm
- /opt/oscar/packages/lam/RPMS/lam-with-gm-oscar-module-
7.0-2.i586.rpm
- /opt/oscar/packages/lam/RPMS/lam-oscar-module-7.0-
2.i586.rpm
- /opt/oscar/packages/lam/RPMS/lam-with-gm-oscar-7.0-
2.i586.rpm
- /tftpboot/rpm/libaio-0.3.93-4.i386.rpm
- /opt/oscar/packages/lam/RPMS/lam-oscar-7.0-2.i586.rpm
Use of uninitialized value in concatenation (.) or string
at /opt/oscar/lib/OSCAR/PackageInUn.pm line 619.
executing:/bin/mkdir -
p /var/lib/systemimager/images/oscarimage/tmp/tmpinstallrpm/
executing:/bin/cp /tftpboot/rpm/libaio-devel-0.3.93-
4.i386.rpm /opt/oscar/packages/lam/RPMS/lam-with-gm-
oscar-module-7.0-
2.i586.rpm /opt/oscar/packages/lam/RPMS/lam-oscar-module-
7.0-2.i586.rpm /opt/oscar/packages/lam/RPMS/lam-with-gm-
oscar-7.0-2.i586.rpm /tftpboot/rpm/libaio-0.3.93-
4.i386.rpm /opt/oscar/packages/lam/RPMS/lam-oscar-7.0-
2.i586.rpm /var/lib/systemimager/images/oscarimage/tmp/tmpi
nstallrpm/
executing:/bin/rpm -Uvh --
root /var/lib/systemimager/images/oscarimage /var/lib/syste
mimager/images/oscarimage/tmp/tmpinstallrpm/libaio-devel-
0.3.93-
4.i386.rpm /var/lib/systemimager/images/oscarimage/tmp/tmpi
nstallrpm/lam-with-gm-oscar-module-7.0-
2.i586.rpm /var/lib/systemimager/images/oscarimage/tmp/tmpi
nstallrpm/lam-oscar-module-7.0-
2.i586.rpm /var/lib/systemimager/images/oscarimage/tmp/tmpi
nstallrpm/lam-with-gm-oscar-7.0-
2.i586.rpm /var/lib/systemimager/images/oscarimage/tmp/tmpi
nstallrpm/libaio-0.3.93-
4.i386.rpm /var/lib/systemimager/images/oscarimage/tmp/tmpi
nstallrpm/lam-oscar-7.0-2.i586.rpm
Error executing:/bin/rpm -Uvh --
root /var/lib/systemimager/images/oscarimage /var/lib/syste
mimager/images/oscarimage/tmp/tmpinstallrpm/libaio-devel-
0.3.93-
4.i386.rpm /var/lib/systemimager/images/oscarimage/tmp/tmpi
nstallrpm/lam-with-gm-oscar-module-7.0-
2.i586.rpm /var/lib/systemimager/images/oscarimage/tmp/tmpi
nstallrpm/lam-oscar-module-7.0-
2.i586.rpm /var/lib/systemimager/images/oscarimage/tmp/tmpi
nstallrpm/lam-with-gm-oscar-7.0-
2.i586.rpm /var/lib/systemimager/images/oscarimage/tmp/tmpi
nstallrpm/libaio-0.3.93-
4.i386.rpm /var/lib/systemimager/images/oscarimage/tmp/tmpi
nstallrpm/lam-oscar-7.0-2.i586.rpm
:warning: /var/lib/systemimager/images/oscarimage/tmp/tmpin
stallrpm/libaio-devel-0.3.93-4.i386.rpm: V3 DSA signature:
NOKEY, key ID db42a60e
Preparing...
#########################################
#########
installing package lam-with-gm-oscar-7.0-2 needs 8MB
on the / filesystem
Error: cannot install to the image:1
Error: package (lam) failed to install.
Use of uninitialized value in pattern match (m//)
at /usr/lib/perl5/site_perl/oda.pm line 2930.
--> About to
run /opt/oscar/packages/oda/scripts/post_install for oda
generating the /etc/odaserver file on all oscar clients
. /etc/profile.d/c3.sh && cexec 'echo oscar_server
> /etc/odaserver'
************************* oscar_cluster
*************************
--------- oscarnode1.ncsa.uiuc.edu---------
executed post_install phase on server for package: (oda)
Use of uninitialized value in pattern match (m//)
at /usr/lib/perl5/site_perl/oda.pm line 2930.
--> About to
run /opt/oscar/packages/switcher/scripts/post_install for
switcher
Setting default for tag mpi ("lam-7.0")
Attribute successfully set; new attribute setting will be
effective for
future shells
building file list ... done
switcher.ini
wrote 239 bytes read 42 bytes 80.29 bytes/sec
total size is 189 speedup is 0.67
executed post_install phase on server for package: (switcher)
Use of uninitialized value in pattern match (m//)
at /usr/lib/perl5/site_perl/oda.pm line 2930.
executed post_install phase on server for package: (sis)
Use of uninitialized value in pattern match (m//)
at /usr/lib/perl5/site_perl/oda.pm line 2930.
executed post_install phase on server for package: (pvm)
Use of uninitialized value in pattern match (m//)
at /usr/lib/perl5/site_perl/oda.pm line 2930.
--> About to
run /opt/oscar/packages/pfilter/scripts/post_install for pfilter
(re)starting the pfilter firewall service on this server
/etc/init.d/pfilter restart
Restarting pfilter: [ OK ]
pushing out the clients pfilter firewall configuration file
. /etc/profile.d/c3.sh &&
cpush /etc/pfilter.conf.clients /etc/pfilter.conf
building file list ... done
wrote 59 bytes read 20 bytes 22.57 bytes/sec
total size is 867 speedup is 10.97
(re)starting the pfilter firewall service on the clients
. /etc/profile.d/c3.sh && cexec /etc/init.d/pfilter restart
************************* oscar_cluster
*************************
--------- oscarnode1.ncsa.uiuc.edu---------
Restarting pfilter:[ OK ]
executed post_install phase on server for package: (pfilter)
Use of uninitialized value in pattern match (m//)
at /usr/lib/perl5/site_perl/oda.pm line 2930.
executed post_install phase on server for package: (perl-Qt)
Use of uninitialized value in pattern match (m//)
at /usr/lib/perl5/site_perl/oda.pm line 2930.
--> About to
run /opt/oscar/packages/pbs/scripts/post_install for pbs
PBS mom config file updated with clienthost: vm-
rh90.ncsa.uiuc.edu
Pushing config file to clients...
building file list ... done
config
wrote 79 bytes read 42 bytes 34.57 bytes/sec
total size is 123 speedup is 1.02
Sending SIGHUP to all moms...
************************* oscar_cluster
*************************
--------- oscarnode1.ncsa.uiuc.edu---------
Shutting down PBS Server: [ OK ]
Starting PBS Server: [ OK ]
Updating pbs_server nodes
set node oscarnode1.ncsa.uiuc.edu np = 1
Creating pbs workq queue...
Max open servers: 4
set queue workq resources_max.ncpus = 1
set queue workq resources_max.nodect = 1
set queue workq resources_available.nodect = 1
set server resources_available.ncpus = 1
set server resources_available.nodect = 1
set server resources_available.nodes = 1
set server resources_max.ncpus = 1
set server resources_max.nodes = 1
set server scheduler_iteration = 60
Shutting down MAUI Scheduler: [ OK ]
Starting MAUI Scheduler: [ OK ]
executed post_install phase on server for package: (pbs)
Use of uninitialized value in pattern match (m//)
at /usr/lib/perl5/site_perl/oda.pm line 2930.
--> About to
run /opt/oscar/packages/opium/scripts/post_install for opium
building file list ... done
gshadow
wrote 80 bytes read 42 bytes 34.86 bytes/sec
total size is 474 speedup is 3.89
building file list ... done
wrote 51 bytes read 20 bytes 28.40 bytes/sec
total size is 189 speedup is 2.66
building file list ... done
passwd
wrote 416 bytes read 54 bytes 188.00 bytes/sec
total size is 1505 speedup is 3.20
building file list ... done
group
wrote 383 bytes read 42 bytes 170.00 bytes/sec
total size is 578 speedup is 1.36
building file list ... done
shadow
wrote 336 bytes read 48 bytes 153.60 bytes/sec
total size is 932 speedup is 2.43
executed post_install phase on server for package: (opium)
Use of uninitialized value in pattern match (m//)
at /usr/lib/perl5/site_perl/oda.pm line 2930.
--> About to
run /opt/oscar/packages/ntpconfig/scripts/post_install for
ntpconfig
************************* oscar_cluster
*************************
--------- oscarnode1.ncsa.uiuc.edu---------
Shutting down ntpd: [ OK ]
ntpd: Synchronizing with time server: [ OK ]
Starting ntpd: [ OK ]
executed post_install phase on server for package:
(ntpconfig)
Use of uninitialized value in pattern match (m//)
at /usr/lib/perl5/site_perl/oda.pm line 2930.
executed post_install phase on server for package:
(networking)
Use of uninitialized value in pattern match (m//)
at /usr/lib/perl5/site_perl/oda.pm line 2930.
executed post_install phase on server for package: (mpich)
Use of uninitialized value in pattern match (m//)
at /usr/lib/perl5/site_perl/oda.pm line 2930.
executed post_install phase on server for package: (maui)
Use of uninitialized value in pattern match (m//)
at /usr/lib/perl5/site_perl/oda.pm line 2930.
--> About to
run /opt/oscar/packages/loghost/scripts/post_install for
loghost
************************* oscar_cluster
*************************
--------- oscarnode1.ncsa.uiuc.edu---------
oscar_loghost already set
executed post_install phase on server for package: (loghost)
Use of uninitialized value in pattern match (m//)
at /usr/lib/perl5/site_perl/oda.pm line 2930.
Use of uninitialized value in pattern match (m//)
at /usr/lib/perl5/site_perl/oda.pm line 2930.
executed post_install phase on server for package:
(kernel_picker)
Use of uninitialized value in pattern match (m//)
at /usr/lib/perl5/site_perl/oda.pm line 2930.
executed post_install phase on server for package: (hdf5)
Use of uninitialized value in pattern match (m//)
at /usr/lib/perl5/site_perl/oda.pm line 2930.
executed post_install phase on server for package: (disable-
services)
Use of uninitialized value in pattern match (m//)
at /usr/lib/perl5/site_perl/oda.pm line 2930.
executed post_install phase on server for package: (c3)
Use of uninitialized value in pattern match (m//)
at /usr/lib/perl5/site_perl/oda.pm line 2930.
executed post_install phase on server for package: (base)
Use of uninitialized value in pattern match (m//)
at /usr/lib/perl5/site_perl/oda.pm line 2930.
----------------------------------------------------------------------
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