> system(qq~agrep "$fir\t$sec\t" $outfile > tmp~); ## agrep is an external 
> utility to find search pattern in a file and transfer it into other file.

> system(qq~agrep "$thr" tmp > tmp1~); ## agrep is more faster than regular 
> expression. 

Are two system calls to agrep really faster than a single, well-crafted
regex? This would be the first thing I'd look at to speed performance.
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