Hi guys,
i have a question about Bio::Tools::Run::StandAloneBlastPlus.
I wanted to speed up my blast program which is using this module so i
was reading about threads. I know i can provide BLAST+ with a number
of threads but still i was thinking that i could speed it up by
creating many threads within my perl script which run blast with
several threads each.
For small seq data sets its not a problem but when i have to blast
100K seqs its lots of time of waiting.
Using onlt threads is creating a copy of the factory every time so my
script is actually getting slower so then i saw there is
threads::shared but it seems i cant share the factory object.I get the
message:
Invalid value for shared scalar
Then i was reading around the net and somewhere i found that one is
not advised to share an object if its not designed to be shared.
So the question is: Is the factory object designed to be shared?
Thank you for your time and any help or hints.
Cheers
D.
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