An important issue that is likely to come up soon in healthcare is the integration of a person’s genetic information in the electronic medical record.

 

So, would it make sense to extend the person class to hold a person’s genomic information?

 

Another big issue is one of privacy. How does one specify ACLs related to what fields of the person class be visible to which classes of users?

Maybe we need another ontology there?

 

---Vipul

 


From: [EMAIL PROTECTED] [mailto:[EMAIL PROTECTED] On Behalf Of [EMAIL PROTECTED]
Sent: Thursday, September 14, 2006 8:08 AM
To: [EMAIL PROTECTED]
Cc: Marco Brandizi; public-semweb-lifesci@w3.org; [EMAIL PROTECTED]
Subject: Re: A question on the vocabulary for 'persons'

 


Kei

You raised a good point here.  

Indeed, person can have multiple roles in a given organization or scenario. Capturing this multiplicity in the "person" ontology should not be a problem - you simply add a triple for each role the person assumes.  

These roles are likely to change over time, as you point out in your email.  Such changes should not be a problem, just as  one might change their home addresses.   As with your home address, you can add "effectiveUntil" and "effecitiveOn" to specify the valid period of this information.  In addition, a role is only meaningful within a scope.  In HL7, it uses "scopedRole" and "playedRole" to set this context.  This, too, can be modelled in ontology.

My problem is with the so-called "participation".  Participation is similar to "role" but might change in each episode.  For example, Dr. K is a chest specialist (Role) in hospital A.  He is sick today and is treated at hospital A.  So in such "patient-encounter" episode, he is a patient (Participation).  

I am not sure if the person ontology should concern such transitional concepts.

Helen


kc28 <[EMAIL PROTECTED]>
Sent by: [EMAIL PROTECTED]

09/13/2006 09:45 PM

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Marco Brandizi <[EMAIL PROTECTED]>

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Subject

Re: A question on the vocabulary for 'persons'

 

 

 






Hi Marco et al.,

It is also possible that a person can have multiple roles (e.g.,
researcher and teacher). Are there standard vocabularies that we can use
to describe roles, for example? There might be a temporal aspect as
well. For example, a person at one point was a postdoc but later became
a professor. If this is taken into account, we can ask questions like
what is the most recent role(s) a person has. This may somewhat relates
to how we should model a paitent/subject involved in a longitudinal
studies. Besides relations (how persons relate to each other), we might
also want to think about how persons are grouped for different
basic/clinical research purposes. For examples, panels vs. cohorts,
population samples vs. pedigrees, etc... This might have been
thought/discussed about by other people. I may just reignite such
thought and discussion.

Cheers,

-Kei

Marco Brandizi wrote:

>
> kei cheung wrote:
>
>> Based on my limited experience, a person in the life science and
>> healthcare context can be considered as a subject or patient (which
>> can be a subclass of person). Of course, there are other roles a
>> person can play (e.g., doctors, researchers, and authors). For
>> genetic studies, a group of subjects/indviduals may be a
>> family/pedigree. In this case, relationships among these  family
>> members may include Father_of, Mother_of, Child_of, etc. Other types
>
>
> Hi Kei,
>
> In addition, I think there is another side as well: science community
> people, having a role (student, teacher, director of), relations with
> fields of study ( immunologist, studies TLR signalling), relations with
> events and scientific production ( has published, has organized
> conference ), relations with other people ( works with, supervisor of,
> ... ).
>
> I vaguely remember at least one similar case of ontology, does anyone
> have further details?
>
> Cheers.
>


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