Alan, All
Just a marker fort now. It would be useful to coordinate this with
work on the clinical trials ontology, OCRe which is being developed
in conjunction with Ida Sim at TrialBank, the UK CancerGrid Project,
Samson Tu at Stanford.
I am not likely to make the telecon today - just baack from holiday
and found this by accident. I'll try to find out later.
Regards
Alan Rector
On 27 Aug 2007, at 20:18, Alan Ruttenberg wrote:
In case it's of interest, I did a small prototype of how one might
evaluate the sort of criteria, in OWL, that Rachel describes in her
attachment. The post about it is here:
http://lists.w3.org/Archives/Public/public-semweb-lifesci/2007Feb/
0076.html
Subject: counted inclusion + exclusion criteria in OWL
This only addresses the technical issue of how to write the rule.
It doesn't questions of necessary vocabulary, that would be needed
to handle the use case Rachel suggests, just how to put them
together once you have it.
Regards,
Alan
On Aug 27, 2007, at 2:16 PM, Rachel Richesson wrote:
I am attaching some background information on the use case for
discussion on tomorrow at 11 eastern.
I will do my best to lead the call and get feedback on the context
of the use case, and the constructs that might be of most
interest. The attached document describes the idea of querying EMR
data for patients potentially eligible for a given research
protocol, and includes the eligibility criteria from 3 breast
cancer studies that are listed on ClinicalTrials.gov. These
examples illustrate the many constructs (lab, findings, history,
procedures, diagnosis, mutation….) that are found in “eligibility”
criteria, which is a big challenge for the group. I think some
discussion and consensus from the group will help to focus a
general use case over the next few weeks.
I hope that Landen and Bron (from CDISC) can then elaborate on
which CDISC standards might be most applicable here, and perhaps
see how this context relates to an earlier demo on EMR-CDISC
harmonization that was conducted at HIMSS last year.
Thanks,
Rachel
From: [EMAIL PROTECTED] [mailto:public-semweb-
[EMAIL PROTECTED] On Behalf Of Kashyap, Vipul
Sent: Monday, August 27, 2007 9:56 AM
To: public-semweb-lifesci@w3.org; [EMAIL PROTECTED]
Cc: Stanley Huff; Yan Heras; Oniki, Tom (GE Healthcare,
consultant); Joey Coyle; Landen Bain; Bron W. Kisler; Eric Neumann
Subject: [BIONT-DSE] Clinical Observations Interoperability Telcon
August 28th, Tuesday 11:00am - 12:00pm US EDT
Clinical Observations Interoperability Telcon
http://esw.w3.org/topic/HCLS/OntologyTaskForce/BIONTDSEDCM
Date and Time:
August 28th, Tuesday 11:00am – 12:00pm US EDT
Agenda:
1. Presentation and Discussion of Use Case:
Rachel Richesson
2. Presentation of CDISC Standards and
Activities Relevant to this Activity – Landen Bain (CDISC liaison
for Healthcare)
Telcon Details:
Phone
+1 617 761 6200, conference 24668 ("BIONT")
IRC
irc://irc.w3.org:6665/hcls
Browser-based IRC client
http://www.w3.org/2001/01/cgi-irc
Feel free to annotate wiki page above with feedback and suggestions.
Cheers,
---Vipul
=======================================
Vipul Kashyap, Ph.D.
Senior Medical Informatician
Clinical Informatics R&D, Partners HealthCare System
Phone: (781)416-9254
Cell: (617)943-7120
http://www.partners.org/cird/AboutUs.asp?cBox=Staff&stAb=vik
To keep up you need the right answers; to get ahead you need the
right questions
---John Browning and Spencer Reiss, Wired 6.04.95
The information transmitted in this electronic communication is
intended only for the person or entity to whom it is addressed and
may contain confidential and/or privileged material. Any review,
retransmission, dissemination or other use of or taking of any
action in reliance upon this information by persons or entities
other than the intended recipient is prohibited. If you received
this information in error, please contact the Compliance HelpLine
at 800-856-1983 and properly dispose of this information.
<use case background_W3C Life Sciences_8-27-07.doc>
-----------------------
Alan Rector
Professor of Medical Informatics
School of Computer Science
University of Manchester
Manchester M13 9PL, UK
TEL +44 (0) 161 275 6149/6188
FAX +44 (0) 161 275 6204
www.cs.man.ac.uk/mig
www.clinical-esciences.org
www.co-ode.org