Dear Anita,
re the ISATAB collaboration (your point 2 below): Tim, Philippe and I
agreed to work on this, to take forward the ISA-RDF proposal and combine
it with the generic elements from our MIIDI minimum information
standard, the ideas for MIBBI Core, and other attempts at defining
minimal information requirements for biomedical investigations that Tim
knows about. We will attempt to come up with an agreed set of terms -
that we could call MIBBI Core for want of a better name - that are
defined and mapped to RDF. I plan to start work on this tomorrow, with
a view to circulating a draft to Tim and Philippe for amendment, then
submission to all the task force in advance of our next conference call
on October 10th.
Kind regards,
David
On 04/10/2011 21:55, Waard, Anita de A (ELS-AMS) wrote:
Dear all,
I think we never put up notes for last week's meeting, oops! The conclusions
were, as far as I can recall:
1 - Re. our old use cases: we will revisit use case 1 (Jodi Schneider/Anita de
Waard) and 2 (Tim will ask Tudor Groza's input). Use case 3 has been addressed
by ORB and is dropped.
2 - Re. ISATAB collaboration: this will also be written up as a use case
according to the new template (see links below)
3 - Before the next call, all use cases will be circulated in draft and
comments invited
4 - Also before the next call, we will all circulate use case ideas we would
like to work on.
In this light, I hereby enclose the draft document Jodi and I have been working
on: Use Case 1, but following the new template.
I would like to solicit collaboration on two other use cases:
1) Linking patient data to clinical recommendations and then to clinical
evidence
2) Mining treatment outcomes as a way to provide an anonymous 'clinical trial'
type of data source that can be made freely available and used for drug
efficacy/outcome studies.
If anyone is interested in working on either of these, please drop me a line.
The proposal is that we discuss all submitted and proposed use cases at the
call next week.
All suggestions most welcome!
Best,
- Anita.
Anita de Waard
Disruptive Technologies Director, Elsevier Labs
http://elsatglabs.com/labs/anita/
a.dewa...@elsevier.com
-----Original Message-----
From: Waard, Anita de A (ELS-AMS)
Sent: Mon 9/26/2011 9:15
To: Tim Clark; HCLS IG
Subject: RE: Reminder: HCLS Sci Disc call - ISA-RDF& Use Case Review- Mon 26
Sept 10am-11am EDT / 14:00-15:00 UTC
Dear all,
Further to the first agenda point, use cases, for our call in 42 minutes, I'd
like to review:
a) The new HCLS Use Case template which can be found here:
https://docs.google.com/document/d/1DRnwXw7xIOLTjZ4TUiDtT80ouSQYfUqM9KWKXVgr60s/edit?hl=en_US
b) Our current three use cases:
http://www.w3.org/wiki/HCLSIG/SWANSIOC/Actions/RhetoricalStructure#Use_Cases
and ask ourselves and each other:
1) Are these use cases still valid, or have they been addressed by our work so
far?
2) If they are valid, how can we get them to be compliant with the new format:
can someone take on each use cases?
3) If there's time: brainstorm about other use cases, or otherwise make a plan
to gather more use cases before the next meeting.
Talk in a bit! Best,
- Anita.
Anita de Waard
Disruptive Technologies Director, Elsevier Labs
http://elsatglabs.com/labs/anita/
a.dewa...@elsevier.com
-----Original Message-----
From: Tim Clark [mailto:tim.cl...@rcn.com]
Sent: Fri 9/23/2011 11:04
To: HCLS IG
Subject: Reminder: HCLS Sci Disc call - ISA-RDF& Use Case Review- Mon 26 Sept
10am-11am EDT / 14:00-15:00 UTC
Colleagues:
This is a reminder for the biweekly HCLS Scientific Discourse concall scheduled
for Monday, 26 Sept 10am-11am EDT / 14:00-15:00 UTC.
As discussed in the previous call, we'll be focusing on defined tasks and use
cases for the coming year.
- we will begin a review and update of our use cases
- ISA-RDF will be discussed as a potential shared task for 2011-12 (see
underlying ISA-TAB project here: http://isa-tools.org/ for some background)
Elsevier B.V. Registered Office: Radarweg 29, 1043 NX Amsterdam, The
Netherlands, Registration No. 33156677 (The Netherlands)
--
Dr David Shotton
Image Bioinformatics Research Group, Department of Zoology, University
of Oxford
South Parks Road, Oxford OX1 3PS, UK. Phone: +44 (0)1865-271193
Skype: davidshotton
