For those of you who could not make today's very interesting Sci Discourse call, I am attaching a link to the slides.
http://www.slideshare.net/paolociccarese/domeo-and-text-mining Best Tim On Jan 30, 2012, at 9:53 AM, Joanne Luciano wrote: > Hi, > > We have been on winter break here, so nothing to report at the moment. I have > been working on other projects (including CSHALS from the chairing and > tutorial side). I look forward to updating next time. Unfortunately I cannot > make the call today. > > Happy New Year! > > Kind regards, > > Joanne > > Sent from my iPhone > > On Jan 23, 2012, at 11:23 AM, "Waard, Anita de A (ELS-NYC)" > <a.dewa...@elsevier.com> wrote: > >> Please find enclosed the notes to our call. For a hyperlinked version, see >> http://www.w3.org/wiki/HCLSIG/SWANSIOC/Actions/RhetoricalStructure/meetings/20120103 >> >>> >> Notes: >> >> 1. Use case 1 status, Rich Boyce: >> >> * gearing up for the C-SHALS presentation >> * in abstract we talked about a conceptual prototype for 2 packages, this >> is now available >> * Now going through the process of building a linked data set and >> revamping prototype in Linked Data standard >> * Current prototype: what does Package Insert enhanced with scientific >> literature look like? Now, want to mark up a paper, take annotations and >> bring into Linked Data graph and link to section in Package insert for two >> drugs >> * code will be posted here >> * Project page for the code here >> * Road map with milestones, are dividing among themselves >> * Now have all the structured product labels in the code repository and >> scientific articles for 2 drugs at C-SHALS >> * Met with Pieder Caduff to discuss XPharm/Pharmapendium to discuss >> details; figuring out protocol for this >> * Should talk to Provenance group; as Elsevier opens up Pharmapendium we >> should bring in some provenance markup to identify where data comes from - >> is Satellite standard compliant with new provenance standard? >> >> Anita to do: look at Satellite and PROV overlap Rich: at noon I will have a >> few full-text annotated with Sapienta will send it around >> >> 2. Use case 2 , David Shotton - >> >> * Stripped out information re. infectious disease - diagram mibio.png >> (sent around earlier) >> * Form to fill in is here can generate a report in the middi format in >> XML; recently at a hackathon people repurposed this format to describe >> cancer research papers >> * Now want to share with rest of the team and see what next steps are >> >> Q Anita how can this be used? A: david: can accompany article as a >> supplementary file; can be published separately e.g. as a pointer to the >> article or as a submission to e.g. Dryad or other data repository >> >> * Questions: 1) Are these the right things you want to add 2) How/where is >> it added? >> * Anita: suggest also looking at Rutgers research data metadata >> >> 3. Use case 3 >> >> * No news, ask Joanne Luciano for update next general meeting >> >> 4. Next calls: >> >> * We'll keep 4-week general call schedule >> * Next general call February 20: Anita will invite someone from the PROV >> group to present [1] >> * Next week (January 30, 2012): Paolo Ciccarese will present re. DOMEO >>> >> >> Best, >> >> - Anita. >> >> Anita de Waard >> Disruptive Technologies Director, Elsevier Labs >> http://elsatglabs.com/labs/anita/ >> a.dewa...@elsevier.com >> >> >> >> -----Original Message----- >> From: Waard, Anita de A (ELS-NYC) >> Sent: Fri 1/20/2012 16:30 >> To: Waard, Anita de A (ELS-NYC); Tim Clark; HCLS IG; >> scidiscou...@googlegroups.com; m...@aber.ac.uk >> Cc: Alberto Accomazzi; Allen, Bradley P (ELS-SDG); Sophia Ananiadou; Philip >> Bourne; Gully Burns; Daniel, Ronald (ELS-SDG); Rahul Dave; Alf Eaton; >> Alexander Garcia Castro; Matthew Gamble; Yolanda Gil; Alyssa Goodman; Paul >> Groth; Tudor Groza; Hays, Ellen (ELS-BUR); Maryann Martone; David R Newman; >> Scerri, Antony (ELS-CAM); Jack Park; Silvio Peroni; Steve Pettifer; Philippe >> Rocca-Serra; Cartic Ramakrishnan; Jodi Schneider; David Shotton; Kaitlin >> Thaney; Karin Verspoor; Lynette Hirschman; Susanna-Assunta Sansone; Kees van >> Bochove; Katy Wolstencroft; Jun Zhao; Taylor, Michael (ELS-OXF) >> Subject: HCLS SciDiscourse call Monday January 23, 2012, Use Case overview; >> Talk on DOMEO planned for January 30 >> >> Dear all, >> >> I cordially invite you to Monday's scientific discourse call, where we will >> do a status update on the three use cases we are working on. >> >> For links, more details and dial-in info see the wiki, and below: >> http://www.w3.org/wiki/HCLSIG/SWANSIOC/Actions/RhetoricalStructure/meetings/20120103 >> >> Dial-in & IRC Information: >> >> Dial-In #: +1.617.761.6200 (Cambridge, MA) >> Dial-In #: +33.4.26.46.79.03 (Paris, France) >> Dial-In #: +44.203.318.0479 (London, UK) >> Participant Access Code: 42572 ("HCLS2") >> IRC Channel: irc.w3.org port 6665 channel #HCLS2 use IRC direct link or (see >> W3C IRC page for details, or see Web IRC) >> Mibbit quick start: Click on mibbit for instant IRC access >> Duration: 1hr >> >> Next week, on January 30, Paolo Ciccarese will present his work on the DOMEO >> web annotation toolkit. The Domeo Web Annotation Toolkit provides several >> important items of common infrastructure that can help support the >> textmining community by offering: >> - Shared results repository with selective sharing (personal, group, public) >> - Standardized serialization and export of results in Annotation Ontology >> RDF/XML >> - Results injection and contextualization on any web page >> - Common curation, annotation and comparison user interface >> - Web service interfaces >> >> His talk and demo will discuss current facilities and future plans for Domeo >> relating to specifically to textmining use cases. Also, Paolo and a >> representative from the Apache/Clerezza community will discuss DOMEO's >> integration with the Apache framework. >> >> Best, >> >> - Anita. >> >> Anita de Waard >> Disruptive Technologies Director, Elsevier Labs >> http://elsatglabs.com/labs/anita/ >> a.dewa...@elsevier.com >> >> >> >> >> >> >> >> >> >> >> Elsevier B.V. Registered Office: Radarweg 29, 1043 NX Amsterdam, The >> Netherlands, Registration No. 33156677 (The Netherlands) >> >>
