A similar question: Does PyMOL have a PDB file parser that can read
disulphide linkages from the file and connect the atoms or one has to
explicitly issue bond commands. Also, can PyMOL display hydrogen bonds
without the user having to write out a list?
thanks,
Kaushik Raha.
Penn State University.
On Friday, September 20, 2002, at 04:07 PM, DeLano, Warren wrote:
Alex,
If the sulfurs are within disulfide bonding distance, PyMOL should
connect them by default. If this is not happening, please send me the
PDB file so I can take a look-see.
Otherwise, you can use the "bond" command to attach them:
bond 24/sg,26/sg
bond 56/sb,99/sg
unpick
(unpick will hide the bond baton which gets displayed)
Cheers,
Warren
--
mailto:war...@sunesis.com
Warren L. DeLano, Ph.D.
-----Original Message-----
From: Alex Morla [mailto:alex...@uic.edu]
Sent: Friday, September 20, 2002 8:48 AM
To: pymol-users@lists.sourceforge.net
Subject: [PyMOL] Disulfide Bonds
Sorry if this is a novice question, but how do I display the
disulfide bonds
in my models?
Thanks, and keep up the great work!!
Alex Morla
Univ. of Illinois, Rockford.
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