Hi Alex,
this should get you started. There may be other ways to do this, but
this works:
create two objects from your dimer
create Ach, /yourPDB//A
create Bch, /yourPDB//B
show surface, Ach
color grey, Ach
color red, Ach within 5 name Bch
This will color red all those objects within 5 Angstroms of any atom
with the Bch object.
Scott
On Apr 15, 2005, at 8:30 AM, Alex Dajkovic wrote:
Dear all,
I have a structure of a dimer and would like to see the surface at the
interface of the two proteins. Is there a way to do this in PyMol?
Alex
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