Hi Uwe,
try Modeller:
http://salilab.org/modeller/
Ciao,
Scott
On May 3, 2005, at 10:02 AM, Heinz-Uwe Hobohm wrote:
Hi,
assume you have a protein structure (P1) and a second protein
sequence (S1) without structure. Both sequences align with about
50% sequence identity over a large portion of both sequences
without gaps (Smith+Waterman).
Is there a way to automatically exchange residues from P1 against
the respective residues in S1 (maybe using a script that exploits
the mutate wizzard residue by residue ?) and do a final bond
relaxation / sidechain orientation / H-bond-length correction ?
Yes, I know, this is more than visualizing ...
Best regards
Uwe Hobohm
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