Thanks for the replies on my "How to spoil PyMol for modelling"
request. Despite Peitzsch's SwissModel (very convenient) and Sali's
Modeller (less convenient but perhaps more precise ?) I would like to
know, for educational purposes, whether PyMol could do reasonably well
also.
To be more precise; assume you apply a script like
cmd.edit("(1NOT`3)",pkresi=1)
wizard mutagenesis
refresh_wizard
cmd.get_wizard().set_mode("ALA")
cmd.get_wizard().apply()
cmd.set_wizard()
residue by residue according to the alignment, which further
(scriptable !) refinement steps are available in PyMol ?
