Kostas,
This command:
dist name, sel1, sel2, mode=3D2
doesn't work because the move value should be a whole number ie. 1,2,3 etc.
Also unless you have some objects actually called sel1 and sel2 you
won't get anything meaningful back.
something like this:
dist name, resn lys, resn glu, mode=2
will give you a new object called name, which shows the distances
between all lysine and glutamate N-O atoms within approxmately 3.5
Angstroms.
Is this clearer?
Jules
Kostas Tripsianes wrote:
On Tuesday 18 October 2005 16:36, pymol-users-requ...@lists.sourceforge.net
wrote:
Hi Warren
It's been a long time since my last post. Anyway I tried the polar contacts
identifier as written below
dist name, sel1, sel2, mode=3D2
and I get the following error
Traceback (most recent call last):
File "/home/kostas/pymol/modules/pymol/parser.py", line 191, in parse
result=apply(kw[nest][0],args[nest],kw_args[nest])
File "/home/kostas/pymol/modules/pymol/querying.py", line 400, in distance
str(selection2),int(mode),float(cutoff),
ValueError: invalid literal for int(): 3D2
using the last version pymol-0_99beta20
Any clue
Another important notion regarded the 0.99 versions and on is that incorrectly
draw bonds between methyl protons. As you understand I work with NMR
structures but I don't have this misinterpretation with previous versions.
The same appeared with 13 and 20 releases. Please keep it in mind.
cheers kostas
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