Well ill be d......! The .pse file you send me shows the loops just fine. I´m still puzzled as to why PyMol 0.98 on win2000 fails to show those loops but now I can just use your .pse file as a template and work my way around it. Ill also try upgrading as Warren suggest. Anyways, thanks a lot for the help, it is greatly appreciated! Cheers kasper
<-----Original Message-----> From: Joel Tyndall Sent: 10/18/2005 10:17:30 PM To: randkas...@icqmail.com Subject: Re: [PyMOL] Missing parts in cartoon mode Hi again, Hmmm had a look and it looks fine to me. I'm assuming you're looking at chain H. See if you can open this pse file which is displaying the cartoon. The only strange thing is that there is no residue 218. sorry I can't be of any more help. might be worth sending Warren/me a pse of the problem? See ya J PS thats a windows pse file and should work randkas...@icqmail.com wrote: > Hi Joel > The two missing loops of the 1DAN structure when in cartoon mode are > located to res. 183-189 and 220-220. I´m using a standard PC with > Windows 2000. > Any suggestions? A fellow collegue in my lab is having identical > troubles but he´s also using a PC with win2000. Its quite frustrating > because the rest of the structure looks great in PyMol! > > Cheers Kasper > The two missing loops of the 1DAN structure when in cartoon mode are > located to res. 183-189 and 220-220. I´m using a standard PC with > Windows 2000. > Any suggestions? A fellow collegue in my lab is having identical > troubles but he´s also using a PC with win2000. Its quite frustrating > because the rest of the structure looks great in PyMol! > > Cheers Kasper > > > <-----Original Message-----> > *From: Joel Tyndall* > Sent: 10/17/2005 12:07:00 AM > To: randkas...@icqmail.com > Subject: Re: [PyMOL] Missing parts in cartoon mode > > Hey Kasper, > > which loops can't you see (amino acid nos./chain/)? what OS are you on > (OSX, PC, Linux?) I have had a look and it looks ok on windows > > Cheers > > J > > randkas...@icqmail.com wrote: > > > Hi everybody > > I am getting quite desperate! For some strange reason PyMol do not > > display certain areas (several loops) of my .pdb file (1DAN) when in > > cartoon display mode. When I display the structure in "lines" or > > "sticks" everything is ok. Other pdb-viewers dont have this problem > > with the same .pdb file. I have tried several things: > > 1. Upgraded to the newest version og PyMol. > > 2. Redefined secondary structure using the "alter" command. > > 3. Imported the .pdb file into SwissViewer, saved as the imported > > structure as a .pdb file, and then imported into PyMOl. > > > > None of these things have solved the problem. Help please! (I would > > hate to have to start using another pdb-viewer!!) Cheers Kasper > > > > _______________________________________________________________ > > ICQ - You get the message, anywhere! > > Get it @ http://www.icq.com > > > > > > > > -- > Joel Tyndall, PhD > > Lecturer > National School of Pharmacy > University of Otago > PO Box 913 Dunedin > NNew Zealand > > Pukenga > Te Kura Taiwhanga Putaiao > Te Whare Wananga o Otago > Pouaka Poutapeta 913 Otepoti > Aotearoa > > Ph / Waea +64 3 4797293 > Fax / Waeawhakaahua +64 3 4797034 > > > . > > _______________________________________________________________ > ICQ - You get the message, anywhere! > Get it @ http://www.icq.com > > > -- Joel Tyndall, PhD Lecturer National School of Pharmacy University of Otago PO Box 913 Dunedin New Zealand Pukenga Te Kura Taiwhanga Putaiao Te Whare Wananga o Otago Pouaka Poutapeta 913 Otepoti Aotearoa Ph / Waea +64 3 4797293 Fax / Waeawhakaahua +64 3 4797034 <P><font face="Arial, Helvetica, sans-serif" size="2" style="font-size:13.5px">_______________________________________________________________<BR><font face="Arial, Helvetica, sans-serif" size="2" style="font-size:13.5px">ICQ - You get the message, anywhere!<br>Get it @ <a href="http://www.icq.com" target=new>http://www.icq.com</a></font><br><br> </font></font>