Warren,
These commands (see below) go a long way toward solving the problem
of producing low resolution simple structures for my textbook
project. I have some questions:
The first command elicits an error:
PyMOL>alter all,b=3D10
Alter-Error: Aborting on error. Assignment may be incomplete.
File "<string>", line 1
b=3D10
^
SyntaxError: unexpected EOF while parsing
Alter-Error: Aborting on error. Assignment may be incomplete.
Alter: modified 0 atoms.
The rest work fine. For a multimeric protein, how do I get different
surface colors on different chains? I tried selecting the chains and
coloring them differently before running the commands below, but the
dsurf object was just one color. Can I make each chain a different
object and add ", objectname" to each of these commands?
Thanks!
Sarina
Message: 6
Subject: RE: [PyMOL] EMizing an xray structure
Date: Wed, 30 Nov 2005 16:51:07 -0800
From: "Warren DeLano" <war...@delsci.com>
To: =?iso-8859-1?Q?Andreas_F=F6rster?= <andr...@biochem.utah.edu>,
<pymol-users@lists.sourceforge.net>
Try a command sequence like this:
alter all,b=3D10
set gaussian_resolution, 9.0
map_new dcalc, gaussian, 3.0
map_double dcalc
isosurface dsurf, dcalc, 1.0
Cheers,
Warren
