Dear Bernhard,
The user manual is quite informative where it comes to making
selections. There is not a polar/nonpolar grouping made for you, but
you can easily select the residues based on their names (resn or r.).
select basic, (resn lys,his,arg)
As a side note, on this as well as all other user lists, it is
preferred that you set a subject line which reflects the question
you're asking. Since many of us are dedicating our own time to
answering, we usually make a preselection of the mails we could
possibly provide an answer to. Mails without subject are likely to be
thrown away unread.
Cheers,
Tsjerk
On 2/23/07, Bernhard Kleine <b...@gmx.net> wrote:
Hello and good morning,
being newly arrived in this list, I am a molecular biologist working
recently in endocrinology and epigenetics and living in the black forest
in the south west of germany.
Since I am not fully content with the picture quality which I can get
with Rasmol, I am trying to use PyMOL. However, since I try to adopt my
rasmol script for use in PyMOL, I am unable to find how to select
individual amino acids, or e.g. polar or basic residues. I am quite
convinced that such shortcuts exist. But either the refmanual oder the
usermanual lack mentioning any typ of aminoacids, so far as I can say
(searching with Acrobat reader).
It would be a pleasure if anyone could point me to the proper
information.
Thanks a lot
Bernhard
--
Bernhard Kleine
mail b...@gmx.net
linux-user Nr. 411598
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--
Tsjerk A. Wassenaar, Ph.D.
Junior UD (post-doc)
Biomolecular NMR, Bijvoet Center
Utrecht University
Padualaan 8
3584 CH Utrecht
The Netherlands
P: +31-30-2539931
F: +31-30-2537623
