Dear all, I have several questions, please help me for this
1. I would like to show side chain one colour by stick and its backbone by cartoon another colour. So I tried to create to same molecules. One with normal backbone (no1) and the other with backbone and a sidechain stick (no2). And it seem fine the no1 can cover no2 backbone so I have no problem with the unwanted backbone colour on the sidechain that I want but when I tried to ray and png them the colour was change it show only no2 molecule so I have backbone as the sidechain. Does anyone have suggestion on how can I let the no1 shows on no2? Or if you have easier suggestion please don't hesitate to tell. 2. How to show hydrogen bond and other interactions? 3. What different between normal 'aline' and 'optAlign'? 4. How to fix the molecule (lock or make it not move). 5. Does pymol have any build in procheck or Ramachandran plot? 6. Do you know any website for pymol beginner tutorial? Esp. how to create movie. I tried to read from pymol manual but I'm quite confuse. Thank you cery much. Adiphol ____________________________________________________________________________________ Food fight? Enjoy some healthy debate in the Yahoo! Answers Food & Drink Q&A. http://answers.yahoo.com/dir/?link=list&sid=396545367
